Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J11
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    29   1.0  
AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical...    26   5.5  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    25   9.7  

>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 137 PQCAFEMSMFKCVLQFTL*RAVNCVLHRPASQVIHRARVMILSA 6
           P C  E +   C++Q  L R  +  +HR  ++V+HR  + ++SA
Sbjct: 204 PSCLHETAT-NCIVQ-ALYRVEDLEMHRKLAEVVHRGVISLVSA 245


>AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical
           protein C17H12.9 protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 148 VSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDPRAK*STV 29
           V T+RN+  K R SN +    YD   T   + P    STV
Sbjct: 61  VQTERNLSKKGRTSNRNARQGYDNYATLTNLQPLPPISTV 100


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
 Frame = -1

Query: 163 SGPGCVSTDRNVRSKC-----RCSNVSCSS 89
           SGP C+  D     KC     +CS VSC S
Sbjct: 486 SGPVCICDDGYFGQKCDQKHDKCSKVSCPS 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,989,550
Number of Sequences: 27780
Number of extensions: 82169
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)