Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_J10
(827 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23646-9|AAM48529.1| 379|Caenorhabditis elegans Hypothetical pr... 33 0.19
L23646-8|AAM48530.1| 411|Caenorhabditis elegans Hypothetical pr... 33 0.19
L23646-7|AAA28038.3| 471|Caenorhabditis elegans Hypothetical pr... 33 0.19
L23646-6|AAU87821.1| 469|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 33 0.33
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 33 0.33
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 33 0.33
AL031627-21|CAA20970.1| 326|Caenorhabditis elegans Hypothetical... 29 3.1
Z81528-5|CAB04287.1| 698|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z83106-5|CAB05492.1| 392|Caenorhabditis elegans Hypothetical pr... 28 9.4
AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein. 28 9.4
AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic avoid... 28 9.4
>L23646-9|AAM48529.1| 379|Caenorhabditis elegans Hypothetical
protein F44E2.7b protein.
Length = 379
Score = 33.5 bits (73), Expect = 0.19
Identities = 29/117 (24%), Positives = 58/117 (49%)
Frame = +1
Query: 379 RCTYRNCTVRSDGVTHMFHYPVFDKVRCHQWLTNAQRLDFLNLKVSQLKNRVVCQHHFED 558
RC + R D HM + V++ VRC +LDF N + ++ R++ +
Sbjct: 256 RCVIKFPRAR-DYFAHMIKHHVYESVRC--------QLDFENATNADVEARMMFRDRILT 306
Query: 559 YWFMNFKKEKLKFEAVPTLNGPFCEPKEDKTSASDKMFPITLEDIENEVLTISDKKA 729
+ NFK E++ A P L EP ++ ++++++ P +L+ ++ E + ++KA
Sbjct: 307 LGY-NFKFEQV---ADPNLVSDVLEPGQEPSTSAEQEDPSSLKIVKLEEPELEEQKA 359
>L23646-8|AAM48530.1| 411|Caenorhabditis elegans Hypothetical
protein F44E2.7c protein.
Length = 411
Score = 33.5 bits (73), Expect = 0.19
Identities = 29/117 (24%), Positives = 58/117 (49%)
Frame = +1
Query: 379 RCTYRNCTVRSDGVTHMFHYPVFDKVRCHQWLTNAQRLDFLNLKVSQLKNRVVCQHHFED 558
RC + R D HM + V++ VRC +LDF N + ++ R++ +
Sbjct: 288 RCVIKFPRAR-DYFAHMIKHHVYESVRC--------QLDFENATNADVEARMMFRDRILT 338
Query: 559 YWFMNFKKEKLKFEAVPTLNGPFCEPKEDKTSASDKMFPITLEDIENEVLTISDKKA 729
+ NFK E++ A P L EP ++ ++++++ P +L+ ++ E + ++KA
Sbjct: 339 LGY-NFKFEQV---ADPNLVSDVLEPGQEPSTSAEQEDPSSLKIVKLEEPELEEQKA 391
>L23646-7|AAA28038.3| 471|Caenorhabditis elegans Hypothetical
protein F44E2.7a protein.
Length = 471
Score = 33.5 bits (73), Expect = 0.19
Identities = 29/117 (24%), Positives = 58/117 (49%)
Frame = +1
Query: 379 RCTYRNCTVRSDGVTHMFHYPVFDKVRCHQWLTNAQRLDFLNLKVSQLKNRVVCQHHFED 558
RC + R D HM + V++ VRC +LDF N + ++ R++ +
Sbjct: 348 RCVIKFPRAR-DYFAHMIKHHVYESVRC--------QLDFENATNADVEARMMFRDRILT 398
Query: 559 YWFMNFKKEKLKFEAVPTLNGPFCEPKEDKTSASDKMFPITLEDIENEVLTISDKKA 729
+ NFK E++ A P L EP ++ ++++++ P +L+ ++ E + ++KA
Sbjct: 399 LGY-NFKFEQV---ADPNLVSDVLEPGQEPSTSAEQEDPSSLKIVKLEEPELEEQKA 451
>L23646-6|AAU87821.1| 469|Caenorhabditis elegans Hypothetical
protein F44E2.7d protein.
Length = 469
Score = 33.5 bits (73), Expect = 0.19
Identities = 29/117 (24%), Positives = 58/117 (49%)
Frame = +1
Query: 379 RCTYRNCTVRSDGVTHMFHYPVFDKVRCHQWLTNAQRLDFLNLKVSQLKNRVVCQHHFED 558
RC + R D HM + V++ VRC +LDF N + ++ R++ +
Sbjct: 346 RCVIKFPRAR-DYFAHMIKHHVYESVRC--------QLDFENATNADVEARMMFRDRILT 396
Query: 559 YWFMNFKKEKLKFEAVPTLNGPFCEPKEDKTSASDKMFPITLEDIENEVLTISDKKA 729
+ NFK E++ A P L EP ++ ++++++ P +L+ ++ E + ++KA
Sbjct: 397 LGY-NFKFEQV---ADPNLVSDVLEPGQEPSTSAEQEDPSSLKIVKLEEPELEEQKA 449
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 364 KMGGCRCTYRNCTVRSDGVTHMFHYPVFDKVRCH 465
K GC+ +Y N T+ S TH+ H+ V VR H
Sbjct: 506 KPSGCKLSYHNKTMTSCDCTHLTHFAVLMDVRGH 539
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
protein B0457.1a protein.
Length = 1014
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 364 KMGGCRCTYRNCTVRSDGVTHMFHYPVFDKVRCH 465
K GC+ +Y N T+ S TH+ H+ V VR H
Sbjct: 508 KPSGCKLSYHNKTMTSCDCTHLTHFAVLMDVRGH 541
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 364 KMGGCRCTYRNCTVRSDGVTHMFHYPVFDKVRCH 465
K GC+ +Y N T+ S TH+ H+ V VR H
Sbjct: 506 KPSGCKLSYHNKTMTSCDCTHLTHFAVLMDVRGH 539
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 364 KMGGCRCTYRNCTVRSDGVTHMFHYPVFDKVRCH 465
K GC+ +Y N T+ S TH+ H+ V VR H
Sbjct: 508 KPSGCKLSYHNKTMTSCDCTHLTHFAVLMDVRGH 541
>AL031627-21|CAA20970.1| 326|Caenorhabditis elegans Hypothetical
protein Y102A5C.33 protein.
Length = 326
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 241 CLVICYFLAQFLVFLCNSREHTTFNSRTK*LQL*FEKYM*VKYIIFLFFVI 89
CL+I Y F ++ N R H N + F K + + Y +F FFV+
Sbjct: 25 CLIISYLTLPFYCYVHNLRRHKEKNLH---IVQSFYKIVKLSYFVFTFFVV 72
>Z81528-5|CAB04287.1| 698|Caenorhabditis elegans Hypothetical
protein F35E2.6 protein.
Length = 698
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -1
Query: 707 RTSFSISSSVIGNILSDADVLSSFGSQNGPFNVGTASNFNFSFLKFINQ*SSKWCWH 537
RTS +++ ++ + +SD + N +N+ N N + K+ Q WC H
Sbjct: 404 RTSNAVTRHLLIHNVSDDMTIDDAIRLNNDWNIHDIQNLNVPYCKYETQGPLAWCSH 460
>Z83106-5|CAB05492.1| 392|Caenorhabditis elegans Hypothetical
protein F22B8.6 protein.
Length = 392
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 159 QNNFNFNLKNICRLST*FFCFLLSRKIKTFEL*IFYNVGNRFQIIFFLDIHN 4
Q + +F + I + + F CFL++R +KT + + + N I FL+ H+
Sbjct: 224 QQHLHFMQRAIGGVPSPFDCFLVNRGLKTLHVRMKAHFENALAIAKFLEAHD 275
>AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein.
Length = 820
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = -2
Query: 436 NETCVLLHLNGQ---CSSDMYTDNPPSLDRKN*HHRSKHSNILLIKSDL 299
N C+L L G + Y D S+DR N H + NI + DL
Sbjct: 441 NNLCMLRFLQGGRRLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDL 489
>AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic
avoidance abnormal protein5 protein.
Length = 820
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = -2
Query: 436 NETCVLLHLNGQ---CSSDMYTDNPPSLDRKN*HHRSKHSNILLIKSDL 299
N C+L L G + Y D S+DR N H + NI + DL
Sbjct: 441 NNLCMLRFLQGGRRLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDL 489
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,887,913
Number of Sequences: 27780
Number of extensions: 385764
Number of successful extensions: 892
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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