Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J07
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   1.5  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   1.5  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    26   1.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   4.7  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    24   6.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    24   8.2  
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    24   8.2  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 141  NNIIFALSLC*IVNYCV*QYS*QRLSFFY 55
            N+I   LS+C  +N CV  Y    LSF+Y
Sbjct: 1301 NSIFLILSICYTINICVKVYG---LSFYY 1326


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 218 ISGCCYSKPLLVPGGRAFVWPAIQSVQRISLNTMTLQVESPTXPIPSP 361
           ++G  +S     P  RA   P+I  V  ++  T  +QV S T   P+P
Sbjct: 145 VNGSVFSGNEASPSSRA---PSITPVDSVNTTTSAIQVPSVTLTAPAP 189


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 222 EITSASLGPHVTNPQVISNISQTKL 148
           EIT  SLGP+  N  V++++ QT L
Sbjct: 40  EITRTSLGPNGKNKIVVNHLQQTFL 64


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 103 KLLRLTIFITETLFFLPTVDS*YSYYFLPQMT 8
           +LL  TI  T  +FFLPT+   Y+ + L +++
Sbjct: 484 QLLLGTILFTVLIFFLPTIYVFYAAFALTRVS 515


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 242 PLLVPGGRAFVWPAIQSV 295
           P L+PGG    WP I+ +
Sbjct: 142 PSLMPGGNPAAWPRIKPI 159


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 323  GSWCLEISVVRSGSLAIQRLDHQGPGVAWNSS 228
            G W  +  +V SG L   + DH  P    N S
Sbjct: 1066 GYWKKKYCIVDSGKLIFYKSDHLDPNACSNVS 1097


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 204 LGPHVTNPQVISNISQTKLLYNNIIFA 124
           L  +  NP +ISNI Q K L N+++++
Sbjct: 65  LNKNYPNPSIISNIIQ-KALSNHLLYS 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,831
Number of Sequences: 5004
Number of extensions: 26404
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)