Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J07
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    28   1.9  
08_02_0370 - 16333471-16333526,16333821-16333912,16334553-163346...    27   3.4  
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601...    27   3.4  
04_03_0498 + 16574250-16574312,16576576-16577457,16578624-165787...    27   3.4  
02_05_0204 - 26721498-26721545,26721731-26721823,26723822-267239...    27   4.4  
06_03_1056 + 27239176-27242361                                         27   5.9  
01_06_0169 - 27172182-27172361,27172552-27172889,27172983-271734...    27   5.9  

>03_05_0816 +
           27928812-27930059,27931007-27931111,27931197-27931262,
           27931337-27931501,27931671-27931745,27931829-27931983,
           27932234-27932369,27932454-27932523,27932602-27932729,
           27932838-27932894,27933326-27933511,27934031-27934123,
           27934488-27934573,27934668-27934734,27934873-27934939,
           27935016-27935152,27935618-27935709,27935849-27935915,
           27936058-27936078
          Length = 1006

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 245 LLVPGGRAFVWPAIQSVQRISLNTMTLQVESPT 343
           L+ PG +AFV+P +    + SL  + L   S T
Sbjct: 82  LISPGSQAFVYPGLSPATQSSLRALLLSAASAT 114


>08_02_0370 -
           16333471-16333526,16333821-16333912,16334553-16334671,
           16335152-16335226,16335328-16335393,16335507-16335563,
           16335640-16335689,16335774-16335944,16337057-16337183,
           16337658-16338017
          Length = 390

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 303 IRCTLWIAGHTKARPPGTRSGLE*QHPEITSASLG 199
           +R    IA    AR PG R+GLE    ++T  S+G
Sbjct: 82  VRVASSIAPRRAARTPGGRAGLERGRDDLTPPSIG 116


>05_04_0299 -
           19958776-19958858,19958883-19959012,19960131-19960175,
           19960252-19960370,19960450-19960543,19961824-19961985,
           19962117-19962266,19962472-19962537,19962934-19962981,
           19963654-19963866,19963953-19964078,19964155-19964232,
           19964600-19964671,19965522-19965953,19966863-19966925,
           19967497-19967898
          Length = 760

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 228 HPEITSASLGPHVTNPQVISNISQTKLLYNNIIFALSLC*IVNYCV 91
           HP+  S ++G  + +PQ + N  Q + LY  +I+ +    I  YCV
Sbjct: 457 HPK--SFAVGLRIEHPQELINDIQGQGLYPKVIYDIDTIKITIYCV 500


>04_03_0498 +
           16574250-16574312,16576576-16577457,16578624-16578714,
           16578802-16578857,16579527-16579640
          Length = 401

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 293 RSGSLAIQRLDHQGPGVAWNSSILKSRVLR*G 198
           RSG L + RLD     + ++  +++SR+LR G
Sbjct: 344 RSGRLIVPRLDPGSQKIIYDMGLIRSRLLRGG 375


>02_05_0204 -
           26721498-26721545,26721731-26721823,26723822-26723931,
           26724029-26724129,26724691-26724917
          Length = 192

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 286 DRWPYKGSTTRDQEWLGIAAS*NHECFVRATCDEPPSH 173
           D  P  GS+   +  L +A   +H C  RA C  P  H
Sbjct: 20  DAVPRAGSSRSRRSSLHLAGRHSHRCHARALCAAPDLH 57


>06_03_1056 + 27239176-27242361
          Length = 1061

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 301 PLYALDRWPYKGSTTRDQEWLG 236
           P Y+LDRW ++   T   +W G
Sbjct: 819 PNYSLDRWLHRAKHTETGKWCG 840


>01_06_0169 -
           27172182-27172361,27172552-27172889,27172983-27173426,
           27174731-27174836,27175401-27175495,27175802-27175958
          Length = 439

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 190 HMWP*RSTRDFRMLLFQATPGPWWSSLCMASDPERTTDISKHHDPSSGVTNXSYTQ 357
           HM+  +    F +++F A+   +   L    DPE+     ++   S   TN SYT+
Sbjct: 305 HMFLQKMAEMFEVVIFTASQSVYADQLLDILDPEKKLFSRRYFRESCVFTNTSYTK 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,283,508
Number of Sequences: 37544
Number of extensions: 169594
Number of successful extensions: 404
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)