Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J07
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   1e-06
SB_57280| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)               27   6.1  

>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 27/47 (57%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +2

Query: 191 TCGPNEALVISG-CCYSKPL-LVPGGRAFVWPAIQSVQRISLNTMTL 325
           T GPNEALV+SG CC S     V GG AF W  +  VQ ISL  MTL
Sbjct: 289 TVGPNEALVVSGGCCGSAAKKTVIGGWAFAWACVTDVQSISLEVMTL 335


>SB_57280| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
          Length = 259

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 188 VTCGPNEALVISGC-CYSKPLLVPGG 262
           VTCG +  +V SGC  +  P++VP G
Sbjct: 112 VTCGCHPVVVTSGCHQWLSPVVVPSG 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,776,850
Number of Sequences: 59808
Number of extensions: 204167
Number of successful extensions: 867
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)