Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J07
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr...    27   3.9  
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.     27   3.9  
Z82056-6|CAB04857.1|  392|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z81528-8|CAB04288.2|  643|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AL032620-2|CAA21488.1|  392|Caenorhabditis elegans Hypothetical ...    27   5.2  
M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical pr...    26   6.9  
Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical
           protein E03A3.6 protein.
          Length = 2089

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 314 CLEISVVRSGSLAIQRLDHQGPGVAWNS 231
           C++ S +      I+ L HQG GV W++
Sbjct: 354 CMDCSTLVHEEGTIKHLQHQGSGVVWST 381


>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical
           protein E03A3.6 protein.
          Length = 2089

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 314 CLEISVVRSGSLAIQRLDHQGPGVAWNS 231
           C++ S +      I+ L HQG GV W++
Sbjct: 354 CMDCSTLVHEEGTIKHLQHQGSGVVWST 381


>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
          Length = 2084

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 314 CLEISVVRSGSLAIQRLDHQGPGVAWNS 231
           C++ S +      I+ L HQG GV W++
Sbjct: 347 CMDCSTLVHEEGTIKHLQHQGSGVVWST 374


>Z82056-6|CAB04857.1|  392|Caenorhabditis elegans Hypothetical
           protein T26H5.8 protein.
          Length = 392

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 259 WSSLCMASDPERTTDISKHH 318
           WS  C+  DP +  DIS  H
Sbjct: 120 WSRCCIFDDPAKVLDISNQH 139


>Z81528-8|CAB04288.2|  643|Caenorhabditis elegans Hypothetical
           protein F35E2.9 protein.
          Length = 643

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -2

Query: 354 GIGXVGDST*RVMVFRDIRCTLWIAGHTKARPPGTRSGLE*QHPE--ITSASLGPHVTNP 181
           GIG  G    ++  + D+ CTL  AG  +     T+  L    P     S +L  + T P
Sbjct: 515 GIGLTGKFAVKIAYYNDVICTL--AGICRQFSNDTQFPLYSNDPSSISNSTTLSFNSTQP 572

Query: 180 QVISNISQTKLLYN 139
            + S+ S  K L N
Sbjct: 573 SITSSTSPPKPLKN 586


>AL032620-2|CAA21488.1|  392|Caenorhabditis elegans Hypothetical
           protein T26H5.8 protein.
          Length = 392

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 259 WSSLCMASDPERTTDISKHH 318
           WS  C+  DP +  DIS  H
Sbjct: 120 WSRCCIFDDPAKVLDISNQH 139


>M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical
           protein B0303.4 protein.
          Length = 616

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 278 PAIQSVQRISLNTMTLQVESPTXPIPSP 361
           P IQ  QR++++   + ++SP   I SP
Sbjct: 85  PRIQGEQRVAISDTNIVIQSPNTVIDSP 112


>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 188 VTCGPNEALVISGCC-YSKPLLVPGGRAFVWPAI 286
           ++C      ++ GC  YS  + +PG R+ VW A+
Sbjct: 249 LSCAQLIIFLLYGCAMYSLRIFLPGERSAVWQAV 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,903,622
Number of Sequences: 27780
Number of extensions: 146355
Number of successful extensions: 313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)