Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J06
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    69   4e-14
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 69.3 bits (162), Expect = 4e-14
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
 Frame = +2

Query: 458 ENRGCGLSTRAQGRITGSRPANPREWPWMASIT-PYGFEQYCGGVLITDRHVLTAAHCTR 634
           ++  C    +   RI G       E+P MA I   Y     CG  +I+ R+VLTAAHC  
Sbjct: 147 DSTNCNCGWKNPSRIVGGTNTGINEFPMMAGIKRTYEPGMICGATIISKRYVLTAAHCII 206

Query: 635 RWDADELYVRLGEYDLQRTNDSRSYNFKVVEK-IXHPNFELSSYH----NDIAILKLHRP 799
             +  +L + +GE+D     ++ +     + K I HP +++        NDIA+LK  + 
Sbjct: 207 DENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKD 266

Query: 800 XVFNTYVWPIXLP-PAXLD-LTNEIATVIGWG 889
             F   V P  LP    LD       TV+GWG
Sbjct: 267 IKFGDKVGPACLPFQHFLDSFAGSDVTVLGWG 298


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 521 NPREWPWMASITPYGFEQY-CGGVLITDRHVLTAAHCTRRWDAD 649
           N +  P +AS T +  E Y C    + +RH+ T  HC   +DAD
Sbjct: 74  NSQVQPSVASTTGFSKECYCCRESYLKERHI-TLHHC---YDAD 113


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 521 NPREWPWMASITPYGFEQY-CGGVLITDRHVLTAAHCTRRWDAD 649
           N +  P +AS T +  E Y C    + +RH+ T  HC   +DAD
Sbjct: 74  NSQVQPSVASTTGFSKECYCCRESYLKERHI-TLHHC---YDAD 113


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 382 LYAFFNFILRAANTDRTPFDYTYVIHK 302
           L+  F+F+        T F +TY+I++
Sbjct: 22  LFVLFSFLRTRTKLQPTYFHHTYIIYE 48


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 382 LYAFFNFILRAANTDRTPFDYTYVIHK 302
           L+  F+F+        T F +TY+I++
Sbjct: 22  LFVLFSFLRTRTKLQPTYFHHTYIIYE 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,318
Number of Sequences: 438
Number of extensions: 5321
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)