Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J01
         (868 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                 31   1.6  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_26153| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 583

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 472 ALFTVHSLAYSLSRALLQHTHILKFRFFSKTYGIFIITALVLVRDLFNVH 323
           A++    LAY  S   L H  I K  F S+ Y  F+I  L  V+ +F  H
Sbjct: 304 AIYKALFLAYPCS-PFLSHDVIYKSLFLSRAYSPFLIPVLFSVKSVFIAH 352


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 147 KPCTRHCSRPKSY--RPCLLPT*PHRYLYKPRRAT 245
           +PC R+  RP  Y  RPC     PHRY  +P R T
Sbjct: 252 RPC-RYTLRPCGYTLRPCGYTLRPHRYTLRPCRYT 285



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 150 PCTRHCSRPK--SYRPCLLPT*PHRYLYKPRRATRDTSRPPSHPTHM*VK*PFKSS*ICR 323
           PC R+  RP+  + RPC       RY  +PRR T    R    P    ++  + +   CR
Sbjct: 29  PC-RYTLRPRYCTLRPCRYTLRTCRYTLRPRRYTLSPCRYTLSPCRYTLRPRYCTLRPCR 87

Query: 324 WTLNKSR 344
           +TL   R
Sbjct: 88  YTLRTCR 94



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 147 KPCTRHCSRPKSY--RPCLLPT*PHRYLYKPRRAT 245
           +PC R+  RP  Y  RPC     P RY  +PRR T
Sbjct: 280 RPC-RYTLRPCRYTLRPCRYTLRPCRYTLRPRRYT 313


>SB_26153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 193 HGRYDFGREQCRVHGFRT 140
           HG++ FGR  C V+GF T
Sbjct: 93  HGKWPFGRVVCEVNGFTT 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,401,741
Number of Sequences: 59808
Number of extensions: 417457
Number of successful extensions: 1009
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)