Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J01
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z29115-1|CAA82362.1|  489|Caenorhabditis elegans Hypothetical pr...    28   9.9  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    28   9.9  

>Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.6 protein.
          Length = 329

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 493 IYSFCGHMNAVK*SFFIKFFEIATPIL*VL*NMFVNIYIYSNSFYTVH*YYNGYFV 660
           I +F     AVK  F   FFEI+T IL V    + N+Y + +    V   Y  +F+
Sbjct: 32  ILTFITTYFAVKILFTQSFFEISTKILLVQNLFYANLYQFFHGIEAVRMLYKSFFM 87


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 11  MPALPLQPINPLFPQQQFTLISTPVVM-NTEVIATDSQILKLTFGAKTVYTTLFTTKVVP 187
           M + P  P  P   +   T  +TP  M +T    T    +K T    T  TT+ +T   P
Sbjct: 230 MKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTP 289

Query: 188 TVLTSYVTS 214
           T + S  T+
Sbjct: 290 TTMKSTPTT 298



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 11  MPALPLQPINPLFPQQQFTLISTPVVM-NTEVIATDSQILKLTFGAKTVYTTLFTTKVVP 187
           M + P  P  P   +   T  +TP  M +T    T    +K T    T  TT+ +T   P
Sbjct: 344 MKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTP 403

Query: 188 TVLTSYVTS 214
           T + S  T+
Sbjct: 404 TTMKSTPTT 412



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +2

Query: 11  MPALPLQPINPLFPQQQFTLISTPVVMNTEVIATDSQILKLTFGAKTVYTTLFTTKVVPT 190
           M + P  P  P   +   T  +TP  M +    T    +K T    T  TT+ +T   PT
Sbjct: 370 MKSTPTTPTTPTTMKSTPTTPTTPTTMKST--PTTPTTMKSTPTTPTTPTTMKSTPTTPT 427

Query: 191 VLTSYVTSSIPVQAS 235
            + S  T+   +++S
Sbjct: 428 TMKSTPTTPSTMKSS 442


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 65  TLISTPVVMNTEVIATDSQILKLTFGAKTVYTTLFTTKVVPTVLTSYVTSSIPV 226
           T   TP  + T    T ++    T   K   TT+ TTK + T  TS  T+SIP+
Sbjct: 225 TTTVTPTTVTTTKAPTTTKTSTSTTTPKFTTTTIQTTKKITTSPTS-TTASIPI 277


>Z29115-1|CAA82362.1|  489|Caenorhabditis elegans Hypothetical
           protein T26G10.1 protein.
          Length = 489

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 686 RVFTVNRF-TVDSMLKFYIFVPNVPNYSPIFLLLYEYRLNKWVL 814
           RV   +R+ TVD++ + YIFVPN    + +  LL E+  N  ++
Sbjct: 245 RVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIV 288


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 8   PMPALPLQPINPLFPQQQFTLISTPVVMNTEV 103
           P P+ P +PI    P Q  T  S P+V +TEV
Sbjct: 661 PEPSAPAEPIVSEAPLQVKTSSSDPIVTSTEV 692


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,097
Number of Sequences: 27780
Number of extensions: 324365
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)