Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I24
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    29   0.95 
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    28   2.2  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   5.1  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   6.7  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    26   8.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   8.9  

>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 289 EDLIVDGKTLSQDDTEKPLSEEDTVFNIITSTVYY 393
           + +    KTL Q + EKP++EE+T+  ++   + Y
Sbjct: 112 QQIAQSSKTLKQTEPEKPVNEEETLAALLAPALSY 146


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 704 FAFFRRFSKEFISNSVTPFFFFVNINATCGS 612
           F  +  F K  I+N V P F +    A CG+
Sbjct: 196 FTIYETFKKNLIANDVKPHFAYAFSGAFCGA 226


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 187 WDLPYLSCLVLYIFSFQVIVINSRTSNIWKLN---LEEDLIVDG 309
           W+L  L+  ++ +F+F  +VI  +   +WK +   LE   IV+G
Sbjct: 391 WNLFALTLAIIILFAFNDLVIFDKLQKLWKYDDTTLEYLKIVNG 434


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 758 LQKLPI*LYNCTDLGFSLFAFFRRFSKEFISNSVTPF 648
           L++L + LY   D+    ++   RFSK+F+ N ++ F
Sbjct: 300 LERLAMILYGIPDIRL-FWSLDERFSKQFLPNKISTF 335


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 457 QRAGSETSEDTPPSETNGHSDDEYLD 534
           QR     S DTPP E    SD+E  D
Sbjct: 650 QRMTEIRSRDTPPEEVFSESDEELSD 675


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 744 WQLLENQRRHSTINRV---FRRALAVAPYNAEVLLNLARV 854
           W      + H ++ +    F+  L  +PYNA +L NLA +
Sbjct: 247 WNRSVLNKEHGSLKKAAEGFKFLLQSSPYNASILKNLAEI 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,812,620
Number of Sequences: 5004
Number of extensions: 79783
Number of successful extensions: 241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)