Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I24
         (945 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0436 + 21226656-21226695,21226819-21226934,21227059-212272...    31   1.3  
02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90...    30   2.3  
09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41...    29   7.1  
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394...    29   7.1  
02_01_0737 + 5492446-5492770,5492818-5493614                           29   7.1  
06_01_0717 - 5219848-5220178,5220268-5220617,5221807-5221982,522...    28   9.4  

>05_04_0436 +
           21226656-21226695,21226819-21226934,21227059-21227210,
           21227309-21227394,21227999-21228126,21228267-21228317,
           21228574-21228660,21229418-21229487,21230334-21230470,
           21230855-21230932,21231912-21231998
          Length = 343

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 710 SLFAFFRRFSKEFISNSVTPFFFFVNINATCGS 612
           SLF  F+  SK+ ++  +T +FF + I A C +
Sbjct: 73  SLFLLFKFLSKDLVNTVLTAYFFILGIAALCAT 105


>02_01_0124 +
           901034-901153,901455-901481,901713-901792,903739-903811,
           904015-904072,904561-904615,905140-905164,905361-905421,
           907416-907531,907661-907812,907918-908003,908182-908309,
           908451-908501,908774-908860,908964-909033,909351-909407,
           909729-909865,910313-910390,910971-911057
          Length = 515

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 710 SLFAFFRRFSKEFISNSVTPFFFFVNINATCGS 612
           SLF  F+  SK+ ++  +T +FF + I A C +
Sbjct: 226 SLFLLFKFLSKDLVNAVLTAYFFILGIAALCAT 258


>09_01_0020 +
           413723-413738,413867-413934,414849-415144,415275-415400,
           415484-415566,416514-416628,416755-416847,416963-417021,
           417609-417684,417812-417901,418050-418202,418294-418480,
           418752-418839,419077-419125,419233-419329
          Length = 531

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 436 DCQIYEQQRAGSE-TSEDTPPSETNGH-SDDEYLDCGKAVN 552
           D  + +QQ+ G   +S+D  PS  NGH  + E+  CG   +
Sbjct: 137 DQTVQQQQQQGVNISSKDVEPSHKNGHGQNSEWATCGNGTD 177


>04_04_0835 +
           28538032-28539006,28539113-28539203,28539291-28539448,
           28539543-28539594,28539707-28539786,28539890-28539983,
           28540078-28540633,28541160-28541259,28541576-28541617,
           28542445-28542588
          Length = 763

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 178 IKMWDLPYLSCLVLYIFSFQVIVINSRTSNIWKLNLEEDLIVDGKTLSQDDTEKPLSEED 357
           ++MW++ Y +C+ +Y  S  V  +     N+   NL     +DGK    D T   + +  
Sbjct: 336 VRMWEIGYANCIRVYPHSNFVTCVQ---FNLADENLFISGSIDGKIRVWDITRSSVVDWV 392

Query: 358 TVFNIITSTVY 390
            + +I+T+  Y
Sbjct: 393 DIRDIVTAVCY 403


>02_01_0737 + 5492446-5492770,5492818-5493614
          Length = 373

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
 Frame = +1

Query: 223 IFSFQVIVINSRTSNI-WKLNLEEDLIVD-GKTLSQDDTEKPLSEEDTVFNIITSTVYYG 396
           +F   +I ++S +S   W+L ++E  +   G+ + Q     PL E         S  +  
Sbjct: 261 VFHMSIIKVSSSSSPASWQLLVQEFPVASLGRMIPQPRIFSPLGEGS-----FCSVGWLA 315

Query: 397 NTWTKHGFDMFCTDCQIYEQQRAGSETSEDTPPSETNGHSDDEY 528
           ++   HG       CQI E Q  G+E+ +D   +    H D  Y
Sbjct: 316 SSGRSHG-------CQIKEYQIEGAESKKDLQATVQVKHQDQTY 352


>06_01_0717 -
           5219848-5220178,5220268-5220617,5221807-5221982,
           5222065-5222302,5224492-5224657,5224792-5225159,
           5225261-5225436,5227742-5227976,5228242-5228493,
           5228513-5228848
          Length = 875

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
 Frame = +1

Query: 427 FCTDCQIYEQQRAGSETSEDTPPSETNGHSDDEYLDCGKAVNFTYYDNLVGVARRHRHPN 606
           FCTD  + +    G     D     T    D +  D   +  F        + R+  HP 
Sbjct: 713 FCTDGLVLDDDDTGERVDADVVVLATGFRGDQKLTDMFVSATFKQQIVAAPLYRQCVHPR 772

Query: 607 VPEPQVALI-FTKKKNGVTEFDI 672
           +  PQ+A+I +T+    +  F++
Sbjct: 773 I--PQMAVIGYTENLTSIYTFEM 793


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,862,279
Number of Sequences: 37544
Number of extensions: 493834
Number of successful extensions: 1600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)