Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_I24
(945 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019) 58 8e-09
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_45995| Best HMM Match : Cna_B (HMM E-Value=4.2) 32 0.78
SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85) 31 1.8
SB_27915| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22) 29 4.1
SB_30906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078) 28 9.6
>SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)
Length = 261
Score = 58.4 bits (135), Expect = 8e-09
Identities = 52/162 (32%), Positives = 70/162 (43%)
Frame = +1
Query: 190 DLPYLSCLVLYIFSFQVIVINSRTSNIWKLNLEEDLIVDGKTLSQDDTEKPLSEEDTVFN 369
D +L CL L I S ++ SR + WKLN +G S + L + D + +
Sbjct: 4 DYRHLPCLFLLIVSTSLLC--SRGATHWKLN-------EGVVKSAGNNHDVL-KSDPILS 53
Query: 370 IITSTVYYGNTWTKHGFDMFCTDCQIYEQQRAGSETSEDTPPSETNGHSDDEYLDCGKAV 549
I+T V + C C A S + P S S L CG A
Sbjct: 54 ILTKAVPSKAVGIRKPS---CDQCGNGRSVSASSSVAIQGPTSLELFPSPQ--LTCGPAA 108
Query: 550 NFTYYDNLVGVARRHRHPNVPEPQVALIFTKKKNGVTEFDIN 675
N T YD+L G+ R HP EP+VA+IF KKN + E D+N
Sbjct: 109 NETLYDHLEGIINRESHPPYAEPEVAMIF--KKNEMEEVDLN 148
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 33.5 bits (73), Expect = 0.25
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Frame = +1
Query: 247 INSRTSNIWKLNLEEDLIVDGKTLSQDDTEKPLSEEDTVFNIITSTVYYGNTWTKHGFDM 426
+ S I K +L E+ ++D DD E + E T F + VY GN + HGF
Sbjct: 1118 VMKENSTITKPHLVENFVLDLMAGHMDDGE---TIEFTRFTRVIHPVYTGNPSSLHGFSR 1174
Query: 427 FCTDCQIYEQQRAG-----SETSEDTPPSETNGHSDDEYLDC 537
C + + G S ++ D SE G E C
Sbjct: 1175 VIQACSVNQPTHTGTSKQVSSSTGDRDESEGKGVLRKEIKQC 1216
>SB_45995| Best HMM Match : Cna_B (HMM E-Value=4.2)
Length = 171
Score = 31.9 bits (69), Expect = 0.78
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +1
Query: 286 EEDLIVDGKTLSQDDTEKPL------SEEDTVFNIITSTVYYGNTWTKHGFDMFCTDCQI 447
++DL DG LS DD + S++D + + + Y N + D+FC D +
Sbjct: 12 DDDLSYDGDDLSYDDDDLSYDGDDFSSDDDGLSHDVDDLYYDDNDLSYDDDDLFCDDDDV 71
Query: 448 YEQQRAGSETSEDTPPSETNGHSD 519
+++ +G ++ E SD
Sbjct: 72 SQEEVSGCAPIHESALKEVKSKSD 95
>SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 31.5 bits (68), Expect = 1.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 729 VIQSDWQLLENQRRHSTINRVFRRALAVAPY 821
+IQ W L+ENQ++ + I ++F R +APY
Sbjct: 175 LIQDSWTLVENQKQEAGI-KLFTRLFKIAPY 204
>SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85)
Length = 706
Score = 30.7 bits (66), Expect = 1.8
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 171 LNDQDVGLAILVLFSFVYIFISSYCYKFSHL*YLEIEFRRRPYCRWQNFVSR*HRKTIK* 350
+ +QDV + I + F F+ F+ Y FS L Y F P C+W V+ + I
Sbjct: 94 MREQDVHVVIYIGFGFLMTFLRK--YSFSALGY--NFFISAPVCQWATIVTGVFNQIIGE 149
Query: 351 GRHRIQYN 374
G I+ N
Sbjct: 150 GHSHIKVN 157
>SB_27915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 196 PYLSCLVLYIFSFQVIVINSRTSNIWKLNLEEDLIVDGKTL--SQDDTEKPLSEED 357
P+ C+ I ++ S SN++ NLE DLI D +T+ +QD E+P+ ++
Sbjct: 7 PFALCVSALIILVFYVLWRSPFSNVFHSNLERDLI-DLETIWGTQDTNERPVRRDN 61
>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
Length = 1151
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 938 WGTGPGGAPRAIGGSGRMASSQVLQREQDSR 846
WG GPGG+PRA+ R +V E+D+R
Sbjct: 322 WGNGPGGSPRAL---TRARVDKVKPGERDTR 349
>SB_30906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 28.7 bits (61), Expect = 7.2
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +1
Query: 454 QQRAGSETSEDTPPSETNGHSDDEYLDCGKAV--NFTYYDNLVGVARRHRHPNVPEPQVA 627
QQ AG+ SED + +S G + + +D + G + HPNVPE +A
Sbjct: 79 QQHAGTRESEDKGEHLSMPNSTQNTYPVGPYLIGDRGSHDQIPGQVPQASHPNVPENNIA 138
Query: 628 LIFTKKKNGV 657
KNGV
Sbjct: 139 -ASQSIKNGV 147
>SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 710 KNPNQYSYTIRLATFGESKETL 775
KN N Y+ TI ++TFG+++E L
Sbjct: 395 KNLNNYNATIIMSTFGDAREAL 416
>SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
Length = 539
Score = 28.3 bits (60), Expect = 9.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 898 PPIARGAPPGPVPHGT 945
PP A G PP P+P GT
Sbjct: 436 PPPASGRPPAPIPSGT 451
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,044,285
Number of Sequences: 59808
Number of extensions: 581957
Number of successful extensions: 1542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2764790632
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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