Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I23
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    30   0.25 
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   4.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.4  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   5.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   9.4  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       25   9.4  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 99  NRRCDIQWHFQCHSFNS*RKYS*LERRFWSPANHGDI 209
           N RCD ++HF  H  NS   Y+      + P +H  +
Sbjct: 352 NSRCDTKYHFLGHKCNSCHSYNTCISSIYKPLDHPQV 388


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 285 FWLLDYQLTGVILRSAITSWATIS 214
           F +L YQ T ++  S + SWAT++
Sbjct: 224 FVVLAYQYTNMLSASLLDSWATVA 247


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 371  FTDSFITFNYIVIIIV 418
            F+D FIT NY+V+I++
Sbjct: 1356 FSDPFITSNYLVMIVL 1371


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 28  ALCVTVLLLINVSGIKCFN-VTSPSIEGVIFNGT--FNATVL 144
           A+C+  +L++ +  + CF  +  P + G   NGT  F +TV+
Sbjct: 36  AICILGILILAIVKLFCFKAIIFPIVGGSFNNGTNVFQSTVI 77


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 367 FRNKVSVKNLSRSFYSPNVHSGNIKSNL 284
           F N    K LSR   S ++ S N++SN+
Sbjct: 708 FNNHTGNKILSRQTTSSSIDSNNVQSNI 735


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 195 NHGDIHRRWLPNWLW 239
           N  +I ++WLPN  W
Sbjct: 142 NFSEIQKKWLPNMSW 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,746
Number of Sequences: 5004
Number of extensions: 34892
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)