Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I23
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)                     29   1.8  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                29   2.4  
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)               29   3.2  
SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)                     27   9.6  
SB_991| Best HMM Match : UCH (HMM E-Value=1.2)                         27   9.6  

>SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 571

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +1

Query: 109 VIFNGTFNATVLTRKENTVDLK 174
           + FNG F++++  R+ENTV+LK
Sbjct: 44  IFFNGLFSSSMRERQENTVNLK 65


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -2

Query: 302  KYKVESFGYSIIS*QVLSCALP*P-VGQPSPMNISVICGTPESPFKSTVFSLRVKTVALK 126
            K+++ S     ++ QV  C +  P + +  P     +      P KST  S+  KT    
Sbjct: 980  KHELRSLLQRFVAEQVKECQVDGPPINETRPTASIALDHFTSMPTKSTPTSMPRKTPNTS 1039

Query: 125  VPLNITPSIDGEVTLKHFIPDT 60
            +P   TP+     T   FIP T
Sbjct: 1040 MPTKSTPTSMPRKTPNTFIPST 1061


>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
          Length = 564

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 221 PSPMNISVICGTPESPFKSTVFSLRVKTVALKVPLNITPSIDGEVT 84
           P+P++  V  G P  P   T    R +T+A   P++ TP +D  VT
Sbjct: 249 PTPLDTRVTDGPPGLPLHPTPLDTRSRTIAPGSPMHPTP-LDTLVT 293


>SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 93  TINRRCDIQWHFQCHSFNS*RKYS*LERRFW 185
           ++   CDI WH     F   R  + L+ R+W
Sbjct: 512 SVTTECDIDWHAIAEDFQHARSPAFLQHRWW 542


>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1784

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 284 FGYSIIS*QVLSCALP*PVGQPSPMNISVICGTPESPFKSTVFSLRVKTVALKVP-LNIT 108
           +G+++++ ++    L   + +P    I++    P+SPF+  V  +R   V    P +NI 
Sbjct: 253 YGFTLLAAKIRLYCLRTSI-EPLMRGINIFVSAPDSPFEKEVSMIRFSKVNCVPPEVNIK 311

Query: 107 PS 102
           PS
Sbjct: 312 PS 313


>SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)
          Length = 677

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 215 PMNISVICGTPESPFKSTVFSLRVKT-VALKVPLNITPSIDGEVTLKHFIP 66
           PMN+ V+  +P  P KS + +    T +       I   + G++T  H  P
Sbjct: 295 PMNVDVVVSSPSKPLKSELHAPMESTPITGAGQFQIPTCLSGQLTGMHSTP 345


>SB_991| Best HMM Match : UCH (HMM E-Value=1.2)
          Length = 226

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 79  FNVTSPSIEGVIFNGTFNATVL-TRKENTVDLKGDSGVPQITEIFIG 216
           F +T  S+E   F GT+ ATV  T KE  +       +P+I   F+G
Sbjct: 101 FEMTEESVEAECFGGTYKATVYDTEKERRL----VRTMPEIKGSFVG 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,920
Number of Sequences: 59808
Number of extensions: 248096
Number of successful extensions: 636
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)