Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_I16
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 204 9e-54
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 118 7e-28
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 2.4
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 2.4
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 4.1
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 4.1
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos... 26 5.5
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 5.5
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 7.2
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 7.2
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 9.6
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 204 bits (499), Expect = 9e-54
Identities = 105/221 (47%), Positives = 141/221 (63%), Gaps = 2/221 (0%)
Frame = +1
Query: 148 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 327
M +L ET AGYAIFK D+ L + D L ++ +PEGAS ++KL++F KFE
Sbjct: 1 MFILTETAAGYAIFKAKDKL-LKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDALDNV 59
Query: 328 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREK--FDLQCVSNTNVQELLR 501
+EG + L+V D KLG+AI + + + +S+++VQ+L R
Sbjct: 60 SALVEGKVSSKLSSLLEGLSDSK-SSTLVVADPKLGNAINKLPGLEFEIISDSSVQDLYR 118
Query: 502 CIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELN 681
IR + SL++GL ++ AM+LGL+HSLSR+KLKFSPDK+DTMIVQA LLDDLDKELN
Sbjct: 119 GIREHLSSLISGLAPSDLNAMSLGLSHSLSRHKLKFSPDKVDTMIVQAIALLDDLDKELN 178
Query: 682 NYIMRCREWYGWHFPXLGKIITDNTLFVKVVKLIGTRXYAS 804
Y MR REWYGWHFP +GKII DN + +V+K +G R S
Sbjct: 179 TYAMRVREWYGWHFPEMGKIIQDNLAYARVIKAMGMRTKCS 219
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 118 bits (285), Expect = 7e-28
Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 5/218 (2%)
Frame = +1
Query: 154 VLFETPAGYAIFKLLDESKLS-EIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXXX 330
+L+E+ GY++F ++ +++ + + VV+L++F+ F++
Sbjct: 5 LLYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHALENAN 64
Query: 331 XXIEGXXXXXXXXXXXXXXXXEVQDQ---LLVGDSKLGSAIREKFD-LQCVSNTNVQELL 498
EG + + L V D L ++I+ + D ++C ++ Q+LL
Sbjct: 65 DISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDLL 124
Query: 499 RCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKEL 678
R IR D LL L + LGL HS SR K+KF+ ++ D MI+QA +LD LDK++
Sbjct: 125 RGIRFHGDKLLKQLSPGDFERAQLGLGHSYSRAKVKFNVNRNDNMIIQAIAILDQLDKDI 184
Query: 679 NNYIMRCREWYGWHFPXLGKIITDNTLFVKVVKLIGTR 792
N + MR +EWY WHFP L KI+ DN + +V L+G +
Sbjct: 185 NTFAMRMKEWYSWHFPELSKIVGDNYKYAVIVTLVGDK 222
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 436 SAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLK 606
SA+ + L+C++ + L +C ++ SL+ G+P T L SL K K
Sbjct: 922 SALIDPEFLKCLNEDQITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKKKK 978
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 509 RIHRSSSWTLVFDTHCKS--NFSLMALPSLESPTRS 408
R HRSS V+ HC + ++ LPSL TR+
Sbjct: 221 REHRSSGKNFVYCDHCSNVYHYDCSPLPSLNKETRN 256
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +1
Query: 631 MIVQAQCLLDDLDKELNNYIMRCREWYGWHFPXLGKIITDNTLFVKVV 774
+IV + + ++D E+ +EWY FP L ++ + + K V
Sbjct: 119 LIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCKTV 166
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 639 NNHSVYFVRREL*FVPRKRVSQAQSHSCHFFFR 541
+ HS Y +RREL KR+ + H C FF R
Sbjct: 119 DQHSSY-LRRELNSHREKRLQDTRVHCCLFFIR 150
>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 479 LMSRNCSGVFAHRWTVS 529
+ SR C VFAHRW S
Sbjct: 8 IYSRKCECVFAHRWKPS 24
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 133 YTTIXQIQSVSFNILSFIRKILSLTNTTLPRRCRS 29
YT++ I S +FN F RK N LP + S
Sbjct: 231 YTSVASISSPTFNYDYFARKAFLTRNKPLPEKTGS 265
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 551 SFLGSPARRLSICERIHRSSSWTLVFDT 468
S+L +P RLSI + + SSS T +T
Sbjct: 436 SYLAAPKERLSISDNMSSSSSQTATVNT 463
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 151 LVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFV 291
L L E Y LLDE KLS + +Y+ G +K+ +F+
Sbjct: 1471 LPLVEFKYVYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIKVDDFL 1517
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 756 SVISDDFPKLWEMPTIPFTAPHD 688
++I D P LW P+ P HD
Sbjct: 408 NLIDDSSPLLWREPSFPLIEHHD 430
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,401
Number of Sequences: 5004
Number of extensions: 58162
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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