Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_I16
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 227 6e-60
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 227 6e-60
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 125 4e-29
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 75 3e-18
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 44 1e-04
12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358... 33 0.20
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502 30 1.9
11_06_0541 + 24771145-24775479 30 1.9
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 29 4.4
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 227 bits (556), Expect = 6e-60
Identities = 112/218 (51%), Positives = 148/218 (67%)
Frame = +1
Query: 148 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 327
MLVLFETPAG+A+FK+LDE KL ++++L++EF T + A VV+LK F KFE+
Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAA 60
Query: 328 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCI 507
I+ E L V DSKLG+AI+EK + C+ N+ V EL+R +
Sbjct: 61 TLIIDSKPTKGLRKFLQKHCEGET---LAVADSKLGNAIKEKLKIDCLHNSAVMELMRGL 117
Query: 508 RSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNY 687
R+Q+ L++GL +++ M+LGL+HSLSRYKLKFSP+K+DTMI+QA LLDDLDKELN Y
Sbjct: 118 RNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTY 177
Query: 688 IMRCREWYGWHFPXLGKIITDNTLFVKVVKLIGTRXYA 801
MR REWYGWHFP L KI+ DN + KVVK++G R A
Sbjct: 178 AMRVREWYGWHFPELTKIVADNIQYAKVVKMMGDRTNA 215
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 227 bits (556), Expect = 6e-60
Identities = 112/218 (51%), Positives = 148/218 (67%)
Frame = +1
Query: 148 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 327
MLVLFETPAG+A+FK+LDE KL ++++L++EF T + A VV+LK F KFE+
Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAA 60
Query: 328 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCI 507
I+ E L V DSKLG+AI+EK + C+ N+ V EL+R +
Sbjct: 61 TLIIDSKPTKGLRKFLQKHCEGET---LAVADSKLGNAIKEKLKIDCLHNSAVMELMRGL 117
Query: 508 RSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNY 687
R+Q+ L++GL +++ M+LGL+HSLSRYKLKFSP+K+DTMI+QA LLDDLDKELN Y
Sbjct: 118 RNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTY 177
Query: 688 IMRCREWYGWHFPXLGKIITDNTLFVKVVKLIGTRXYA 801
MR REWYGWHFP L KI+ DN + KVVK++G R A
Sbjct: 178 AMRVREWYGWHFPELTKIVADNIQYAKVVKMMGDRTNA 215
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 125 bits (302), Expect = 4e-29
Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 6/219 (2%)
Frame = +1
Query: 145 SMLVLFETPAGYAIFKLLDESKLSE-IDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXX 321
++ +LFE+ +GY +F ++ + +D + + VKL F F
Sbjct: 2 ALYLLFESASGYGLFHAYGIDEIGQSVDAVRASVVDLDRFGKAVKLAAFTPFSSAVDALN 61
Query: 322 XXXXXIEGXXXXXXXXXXXXXXXXEVQDQ-----LLVGDSKLGSAIREKFDLQCVSNTNV 486
EG + + L V + K+GS I E + C SN V
Sbjct: 62 QCNAISEGIMTDELRSFLELNLPKPKEGKKAKYSLGVVEPKVGSHISEVTGIPCQSNEFV 121
Query: 487 QELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDL 666
QELLR +R D ++ L K ++ LGL HS SR K+KF+ +++D M++QA LLD L
Sbjct: 122 QELLRGVRLHFDRFISELKKSDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTL 181
Query: 667 DKELNNYIMRCREWYGWHFPXLGKIITDNTLFVKVVKLI 783
DK++N++ MR REW+GWHFP L KI+ DN ++ K+ I
Sbjct: 182 DKDINSFSMRVREWFGWHFPELVKIVNDNYIYAKLADYI 220
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 74.5 bits (175), Expect(2) = 3e-18
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 20/92 (21%)
Frame = +1
Query: 568 LGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRC---------------- 699
LGL HS SR K+KF+ +++D M++QA LLD LDK++N++ MR
Sbjct: 187 LGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVSLFFPLFYAMINSGGE 246
Query: 700 ----REWYGWHFPXLGKIITDNTLFVKVVKLI 783
REWY WHFP L KI+ DN ++ K+ K +
Sbjct: 247 SLPPREWYSWHFPELVKIVNDNYVYSKIAKFV 278
Score = 35.5 bits (78), Expect(2) = 3e-18
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 6/152 (3%)
Frame = +1
Query: 145 SMLVLFETPAGYAIFKLLDESKLSE-IDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXX 321
++ +LFE+ +GYA+F ++ + +D + S VKL F F
Sbjct: 2 ALYLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDALN 61
Query: 322 XXXXXIEGXXXXXXXXXXXXXXXX-----EVQDQLLVGDSKLGSAIREKFDLQCVSNTNV 486
EG + + + V + K+GS I E + C N V
Sbjct: 62 QCNAISEGIMTDELRSFLELNLPKVKEGKKAKYSVGVMEPKVGSHISEATGIPCQCNEFV 121
Query: 487 QELLRCIRSQMDSLLAGLPKKEMTAMALGLAH 582
QELLR +R D + L + T + H
Sbjct: 122 QELLRGVRLHFDHFIDQLKVVDFTFALVSTGH 153
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 44.0 bits (99), Expect = 1e-04
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 6/186 (3%)
Frame = +1
Query: 130 YKCASSMLVLFETPAGYAIFKLLDESKL--SEIDNLYQEFNTPEGASTVVKLKNFVKFED 303
Y C +LVLFETP+G+A+F + + + + + ++ F S + LK F + +D
Sbjct: 26 YHCLI-VLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKD 84
Query: 304 XXXXXXXXXXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREKFDLQCVSNTN 483
I ++ VG + I + C+ +
Sbjct: 85 KSSA-------INHDTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIERSLSVPCMFDEI 137
Query: 484 VQELLRCIRSQMDSLLAG----LPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQC 651
V E++ +++ M L+ L K + M+ GL L+RY L P+ + I++ C
Sbjct: 138 VMEVMWGLKNLMHVLVPQEKMKLSKDDYLPMSQGLYMLLNRYGLDVKPEMVTDSIIKLAC 197
Query: 652 LLDDLD 669
L D +
Sbjct: 198 FLLDCE 203
>12_02_1165 +
26633371-26633679,26635183-26635276,26635732-26635822,
26636112-26636199,26636300-26636341,26636648-26636809,
26636915-26637094,26637280-26637447,26637977-26638195
Length = 450
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 154 VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFED 303
+LFETP+G+A+F++ D ++++ F P A VV+ F++ D
Sbjct: 172 MLFETPSGFAMFRVSD-VLFRYPEDIWSSFTDPHTAHQVVRTIGFIEVGD 220
>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
Length = 1385
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 427 KLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLK 606
KLG I +K +L T + +L C+RS +++ K+E T L +SR LK
Sbjct: 935 KLGVVIDDKDNLLKNLLTAISDLCECLRSLSITIVPCSTKREGTPSIGDLPEYISRC-LK 993
Query: 607 FSPDKIDTMIVQ 642
+ P ++++ +Q
Sbjct: 994 YRPKLLESLCLQ 1005
>11_06_0541 + 24771145-24775479
Length = 1444
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 427 KLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLK 606
KLG I +K +L T + +L C+RS +++ K+E T L +SR LK
Sbjct: 993 KLGVVIDDKDNLLKNLLTAISDLCECLRSLSITIVPCSTKREGTPSIGDLPEYISRC-LK 1051
Query: 607 FSPDKIDTMIVQ 642
+ P ++++ +Q
Sbjct: 1052 YRPKLLESLCLQ 1063
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 154 VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVK 294
+LFETP+G+ +F++ D ++++ F P A V+ F++
Sbjct: 360 MLFETPSGFVMFRVSD-VLFRYPEDIWSSFTDPRTAHQAVRTIGFIE 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,790,526
Number of Sequences: 37544
Number of extensions: 353068
Number of successful extensions: 674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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