Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I16
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   5e-30
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                124   1e-28
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)                     31   0.83 
SB_11837| Best HMM Match : Arylesterase (HMM E-Value=1.6e-10)          30   2.5  
SB_17685| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.26)             30   2.5  
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)                   29   4.4  

>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score =  128 bits (309), Expect = 5e-30
 Identities = 56/72 (77%), Positives = 61/72 (84%)
 Frame = +1

Query: 586 LSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPXLGKIITDNTLFV 765
           LSRYKLKFSPDK+DTMIVQA  LLDDLDKELNNY+MRCREWYGWHFP LGKI+TDN  + 
Sbjct: 57  LSRYKLKFSPDKVDTMIVQAISLLDDLDKELNNYVMRCREWYGWHFPELGKIVTDNLAYA 116

Query: 766 KVVKLIGTRXYA 801
           K VK +G R  A
Sbjct: 117 KTVKKMGMRTKA 128


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score =  124 bits (298), Expect = 1e-28
 Identities = 58/126 (46%), Positives = 82/126 (65%)
 Frame = +1

Query: 415 VGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSR 594
           V DSK+G+AI+E  ++ C S   + E+LR IR   D ++ GL     +   LGL HS SR
Sbjct: 29  VADSKIGAAIQESLNICCDSGGVILEVLRGIRMHFDKMIKGLTGAMASKAQLGLGHSYSR 88

Query: 595 YKLKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPXLGKIITDNTLFVKVV 774
            K+KF+  ++D MI+Q+  LLD LDK++N + MR REWY +HFP L KI+ DN ++ KV 
Sbjct: 89  AKVKFNIHRVDNMIIQSIALLDQLDKDINTFSMRIREWYSYHFPELVKIVNDNYMYAKVA 148

Query: 775 KLIGTR 792
           K I +R
Sbjct: 149 KYIKSR 154


>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
          Length = 317

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +1

Query: 481 NVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRY--KLKFSPDKIDTMIVQAQCL 654
           NVQ+  + + + +  LLAGL   E+  +A      +++Y   +KF+ D+   +IV A+  
Sbjct: 23  NVQDWSKDVFASLKQLLAGLESGELAQIAADKFREINQYLCNVKFTGDQKKALIVPAKEA 82

Query: 655 LDDLDKELNNYIMR 696
             +++K   + + +
Sbjct: 83  YGEVEKWTEDVVQK 96


>SB_11837| Best HMM Match : Arylesterase (HMM E-Value=1.6e-10)
          Length = 263

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 142 SSMLVLFETPAGYAIFKLLDESKLSEIDNLYQ-EFNTPEGASTVVKLKNF 288
           SS L LF +   Y +   +D S      NLY  + N P  A  ++ LKNF
Sbjct: 56  SSGLALFSSGLRYTVQLTIDPSIKLRKGNLYLLDLNEPNSAPVILTLKNF 105


>SB_17685| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.26)
          Length = 553

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +1

Query: 436 SAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSP 615
           +A  E FDL+C +N+N  +   C+   M    A +       ++ G   +++R   K   
Sbjct: 446 AAADEGFDLECRANSNTLQATVCLNKDMGKTAAQISVMSSVNLSSG---AVTRIMNKCPA 502

Query: 616 DKIDTMIVQAQCLLDDLD 669
              DT+I+  + + D  D
Sbjct: 503 QSTDTVILSPKQVKDICD 520


>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 404 INSLSVTLSWEVPLEKNLTYNVYQILMSRNCSG 502
           +NS ++TLSW VP       +VY ++    C+G
Sbjct: 279 LNSSAITLSWSVPNNTGGRTDVYYLIECFKCNG 311


>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 136 TYTTIXQIQSVSFNILSFIRKILSLTNTTLPRRCRSTFNTSTV 8
           T   + +  S S N+ SF   +L   N TLP  CR+    ST+
Sbjct: 203 TRNALQENSSSSMNVTSFNSSLLIDVNLTLPITCRNGLGVSTL 245


>SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)
          Length = 769

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 368 KLLRSMFVKRFRINSLSVTLSWEVPLEKNLTYNVYQILMSRN 493
           K +R   VK   + S +V++ W+ PLE  L    Y+I  S N
Sbjct: 636 KDIRPRSVKAVSLGSNAVSVEWQPPLEATLYIQGYKIFKSVN 677


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,189,251
Number of Sequences: 59808
Number of extensions: 428862
Number of successful extensions: 975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)