Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_I16
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043704-1|AAK21475.1| 487|Caenorhabditis elegans Hypothetical ... 217 1e-56
Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical pr... 101 6e-22
U58764-4|AAB00726.2| 216|Caenorhabditis elegans Hypothetical pr... 30 1.7
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 29 3.9
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 3.9
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 28 6.8
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 9.0
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 28 9.0
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 28 9.0
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 28 9.0
AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical ... 28 9.0
>AF043704-1|AAK21475.1| 487|Caenorhabditis elegans Hypothetical
protein W01B11.3 protein.
Length = 487
Score = 217 bits (529), Expect = 1e-56
Identities = 107/215 (49%), Positives = 144/215 (66%)
Frame = +1
Query: 148 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 327
MLVLFE AGYA+FKL +E KL +DN+++EF+T E A ++L +F KF+
Sbjct: 1 MLVLFEVAAGYAVFKLSNEKKLKNVDNIWEEFSTAEKAQENLQLVSFKKFKTTAGAVEAT 60
Query: 328 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCI 507
EG + ++L VGD+KLG+ I+EK L CV ++++ EL+R +
Sbjct: 61 SEITEGKLSKTLKKLLKSSV--DETEKLAVGDAKLGNLIKEKLSLNCVHDSSINELMRGV 118
Query: 508 RSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNY 687
R+ ++ LLA K+EM AM L +AHSL+RYK+KF+P+KIDTMIVQA LLDDLDKELNNY
Sbjct: 119 RAHIEDLLAE-HKEEMNAMNLAVAHSLARYKVKFNPEKIDTMIVQAVSLLDDLDKELNNY 177
Query: 688 IMRCREWYGWHFPXLGKIITDNTLFVKVVKLIGTR 792
+MR REWYGWHFP LGK I D+ + K++K IG R
Sbjct: 178 VMRVREWYGWHFPELGKTIQDHQAYAKIIKAIGMR 212
>Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical
protein K07C5.4 protein.
Length = 486
Score = 101 bits (242), Expect = 6e-22
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 6/216 (2%)
Frame = +1
Query: 154 VLFETPAGYAIFKL--LDESKL--SEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXX 321
VL+E AGYA+ K+ D++ L E+D + + S +V+L +F F++
Sbjct: 8 VLYEHAAGYALMKIKEFDDAGLILQEVDAAHADGYK---FSQIVELASFDPFKNTEAALE 64
Query: 322 XXXXXIEGXXXXXXXXXXXXXXXXEVQDQLL-VGDSKLGSAIREKF-DLQCVSNTNVQEL 495
EG + + +L + DSKL ++ E F DL+ V + E+
Sbjct: 65 NCNSISEGLAHPDLTNFLQKSLPKKKKHVVLGINDSKLAGSLTEAFPDLKLVFGGVITEI 124
Query: 496 LRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKE 675
LR R + L LP ++ L L HS SR K+KF ++D M++Q+ LLD LDK+
Sbjct: 125 LRGTRVHFERLAKNLPHHSLSKAQLSLGHSYSRSKVKFDVHRVDNMVIQSIALLDQLDKD 184
Query: 676 LNNYIMRCREWYGWHFPXLGKIITDNTLFVKVVKLI 783
+N + MR REWY +H+P L ++ D + ++ I
Sbjct: 185 INLFGMRIREWYSYHYPELFRLAPDQYKYSRLAVAI 220
>U58764-4|AAB00726.2| 216|Caenorhabditis elegans Hypothetical
protein M03E7.5 protein.
Length = 216
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 598 KLKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPXLGKIITDNTL 759
KLK+S + ID M+ Q + +DL K+ N ++ R+ + HF I+D T+
Sbjct: 131 KLKYSDNMIDQMLAQGASVFEDLQKQKYN-LLSIRKRF--HFLTKSLGISDTTI 181
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 154 VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFE 300
VL TPA + L E SE+ + ++ E AS V++ K VK++
Sbjct: 2883 VLLGTPASQVFTRNLQEPIQSEVQGFWSTNSSQEKASLVIRQKLNVKYD 2931
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 154 VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFE 300
VL TPA + L E SE+ + ++ E AS V++ K VK++
Sbjct: 2883 VLLGTPASQVFTRNLQEPIQSEVQGFWSTNSSQEKASLVIRQKLNVKYD 2931
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 631 MIVQAQCLLDDLDKELNNYIMRCREWYGWHFPXLGKIITDNTLFVKVVKLIG 786
+IV+ + D+D E+N R+ Y FP L ++ + ++ V+L+G
Sbjct: 101 LIVKLSHVAADIDNEINVIHKFVRDKYEKRFPELETLVPNALTYLATVQLLG 152
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +1
Query: 394 EVQDQLLVGDSKLGSAIREKFD-LQCVSNT---NVQELLRCIRSQMDSLLAGLPKKEMTA 561
E + L K S +RE+ D LQ V N ++Q+L + +M + +++
Sbjct: 299 EAAKKELEASEKEKSELREQMDRLQKVHNAGQEDIQKLQKTWELEMAKIAKSTEDEKLAR 358
Query: 562 MALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKEL 678
L ++ LK ++ T I +AQ LDD +KE+
Sbjct: 359 EQLAGELENAKEDLKVVEEEKHTGIQRAQGALDDAEKEV 397
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +1
Query: 394 EVQDQLLVGDSKLGSAIREKFD-LQCVSNT---NVQELLRCIRSQMDSLLAGLPKKEMTA 561
E + L K S +RE+ D LQ V N ++Q+L + +M + +++
Sbjct: 299 EAAKKELEASEKEKSELREQMDRLQKVHNAGQEDIQKLQKTWELEMAKIAKSTEDEKLAR 358
Query: 562 MALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKEL 678
L ++ LK ++ T I +AQ LDD +KE+
Sbjct: 359 EQLAGELENAKEDLKVVEEEKHTGIQRAQGALDDAEKEV 397
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 190 KLLDESKLSEIDNLYQEFNTPEGASTVVKLKN 285
KLL + +LS N+Y++ N PE TV K N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 190 KLLDESKLSEIDNLYQEFNTPEGASTVVKLKN 285
KLL + +LS N+Y++ N PE TV K N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 190 KLLDESKLSEIDNLYQEFNTPEGASTVVKLKN 285
KLL + +LS N+Y++ N PE TV K N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257
>AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical
protein R02D3.5 protein.
Length = 328
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 419 VTLSWEVPLEKNLTYNVYQILMSRNCSGVFAHRW 520
V +++VPLEK LT+ ++ +L+ + + +R+
Sbjct: 157 VVRTFKVPLEKELTFALHMLLLDNRNNSAYNYRY 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,821
Number of Sequences: 27780
Number of extensions: 328912
Number of successful extensions: 755
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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