Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_I15
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 108 1e-24
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 104 2e-23
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 102 6e-23
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 99 1e-21
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 96 7e-21
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 95 9e-21
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 95 9e-21
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 85 2e-17
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 67 3e-12
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 54 4e-08
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 45 1e-05
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 44 3e-05
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 44 3e-05
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 38 0.001
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 38 0.001
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 34 0.032
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 33 0.055
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 30 0.39
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 29 0.68
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 28 1.6
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 3.6
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 3.6
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 27 3.6
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 4.8
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 26 6.3
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 8.4
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 108 bits (259), Expect = 1e-24
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 5/186 (2%)
Frame = +2
Query: 182 VLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVA----DKDVKLQL 349
++K++L G G GKS L +RF+ N + + T+G+D ++ V K +KLQ+
Sbjct: 9 LVKIVLAGPSGTGKSCLLQRFVKNQW--DDQVSHTVGIDFASRIISVGMGNQQKRIKLQI 66
Query: 350 WDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAENA-KIFLCGN 526
WDT G E+ SV +YY+ A A+LV+ + N SF LS L +I + A + + L G+
Sbjct: 67 WDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGS 126
Query: 527 KSDLEGASPQVTDADIETFCEQCHNLVNSTYKTSCKTGKGIEEMFADIALQLVEANRSRI 706
KSDL+ QV+ + FC + H ++S ++TS TG +EE F + ++ +RI
Sbjct: 127 KSDLQN-QRQVSTEEAAEFCSEKH--ISSAHETSSYTGSNVEECFLSVVSTII----TRI 179
Query: 707 ELQALD 724
EL +D
Sbjct: 180 ELGEID 185
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 104 bits (249), Expect = 2e-23
Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 5/212 (2%)
Frame = +2
Query: 161 MAVVKTPVLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVK 340
MA K +LKVI+ GE GVGK+S+ +++N F + D +AT+G D K V DK V
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKF--SKDYKATIGADFLTKEVLVDDKVVT 58
Query: 341 LQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIV-----SYAENA 505
LQLWDT G ER S+ ++Y+ A+ +LV+ ++N+ SF L E + S E
Sbjct: 59 LQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETF 118
Query: 506 KIFLCGNKSDLEGASPQVTDADIETFCEQCHNLVNSTYKTSCKTGKGIEEMFADIALQLV 685
L GNK D+E V+ + FC+ + ++TS K ++E F +A +L
Sbjct: 119 PFILLGNKVDVEEQKRMVSKSKALAFCQARGEI--PYFETSAKEAINVQEAFETVA-KLA 175
Query: 686 EANRSRIELQALDQNSFKISNPDQPQEPSCSC 781
N ++ A + + + Q+ SC C
Sbjct: 176 LENMDSDDIAADFTDPIHLDM--ESQKTSCYC 205
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 102 bits (245), Expect = 6e-23
Identities = 63/201 (31%), Positives = 106/201 (52%), Gaps = 1/201 (0%)
Frame = +2
Query: 182 VLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTG 361
+ K++L G+ GVGKS L RF ++T+ + +T+G+D + +++ K VKLQ+WDT
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTFELEGKTVKLQIWDTA 65
Query: 362 GMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYA-ENAKIFLCGNKSDL 538
G ER ++TSSYY+ A I+V+ + + SF+ + Q L EI YA E L GNKSD+
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDM 125
Query: 539 EGASPQVTDADIETFCEQCHNLVNSTYKTSCKTGKGIEEMFADIALQLVEANRSRIELQA 718
+V + + E +L +TS K +E+ F ++ Q+ E + +
Sbjct: 126 --VDKKVVEYSVAK--EFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASS 181
Query: 719 LDQNSFKISNPDQPQEPSCSC 781
++S K+ + S +C
Sbjct: 182 NAKSSVKVGQGTNVSQSSSNC 202
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 98.7 bits (235), Expect = 1e-21
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
Frame = +2
Query: 182 VLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTG 361
+ K +L G+ GVGKS+L RF N F N + ++T+G++ + + +K +K Q+WDT
Sbjct: 10 LFKTVLIGDSGVGKSNLLMRFTRNEF--NIESKSTIGVEFATRNIVLDNKKIKAQIWDTA 67
Query: 362 GMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAE-NAKIFLCGNKSDL 538
G ER ++TS+YY+ A A++V+ + SSF + + L E+ +A+ N I L GNK+DL
Sbjct: 68 GQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDL 127
Query: 539 EGASPQVTDADIETFCEQCHNLVNSTYKTSCKTGKGIEEMFADIALQL--VEANRS 700
V+ + + F + +NL S +TS +EE F + ++ + +NRS
Sbjct: 128 LHLR-AVSTEEAQAFAAE-NNL--SFIETSAMDASNVEEAFQTVLTEIFRIVSNRS 179
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 95.9 bits (228), Expect = 7e-21
Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 3/201 (1%)
Frame = +2
Query: 188 KVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADK-DVKLQLWDTGG 364
K++L G+ VGKSSL RF+ + F + R +T+G + + + VKL++WDT G
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQF--DDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAG 73
Query: 365 MERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYA-ENAKIFLCGNKSDLE 541
ER S+ YY+ A AI+V+ + A+S + E+ A E I L GNK DL
Sbjct: 74 QERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLA 133
Query: 542 GASPQVTDADIETFCEQCHNLVNSTYKTSCKTGKGIEEMFADIALQLVEANRSRIELQAL 721
V AD E + + + L ++TS KT + + E+F IA +L ++ A+
Sbjct: 134 QERRAVEKADAEAYAAEANLLF---FETSAKTAENVNELFTAIAKKLPLEDKLNQARGAV 190
Query: 722 DQN-SFKISNPDQPQEPSCSC 781
++ + + P SCSC
Sbjct: 191 NRGVNLSEARPAAQPSGSCSC 211
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 95.5 bits (227), Expect = 9e-21
Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 1/199 (0%)
Frame = +2
Query: 188 KVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTGGM 367
K++ GE VGK+SL RF+ + F ++ +AT+G+D K + D+ V+LQLWDT G
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 70
Query: 368 ERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEI-VSYAENAKIFLCGNKSDLEG 544
ER S+ SY + + AI+V+ + N +SF + + ++ ++ I L GNK+DL
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDL-A 129
Query: 545 ASPQVTDADIETFCEQCHNLVNSTYKTSCKTGKGIEEMFADIALQLVEANRSRIELQALD 724
QVT + E ++ L +TS K G ++ +F IA L +E Q+
Sbjct: 130 DKRQVTQEEGE---KKAKELKIMHMETSAKAGHNVKLLFRKIAQML--PGMENVETQSTQ 184
Query: 725 QNSFKISNPDQPQEPSCSC 781
I P++ E SC+C
Sbjct: 185 MIDVSI-QPNE-NESSCNC 201
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 95.5 bits (227), Expect = 9e-21
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 4/211 (1%)
Frame = +2
Query: 161 MAVVKTPVLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVK 340
M+ K LKV++ G+ GVGK+ L +F+N F + + +AT+G D K V DK V
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKF--SREYKATIGADFLTKDVVVDDKLVT 58
Query: 341 LQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILS---QHLLEIVSYAENAKI 511
LQLWDT G ER S+ ++Y+ A+ ++V++++N+ SF + Q L S E A
Sbjct: 59 LQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFP 118
Query: 512 F-LCGNKSDLEGASPQVTDADIETFCEQCHNLVNSTYKTSCKTGKGIEEMFADIALQLVE 688
F + GN+ D + + V+ +C+ H ++ S K + ++F ++ +E
Sbjct: 119 FIIVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLALE 178
Query: 689 ANRSRIELQALDQNSFKISNPDQPQEPSCSC 781
SR + +S P SC+C
Sbjct: 179 NESSRDDFVNDFSEPLLLSKP-LNNTSSCNC 208
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 84.6 bits (200), Expect = 2e-17
Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 1/168 (0%)
Frame = +2
Query: 182 VLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTG 361
++K++L G+ GVGKS L RF ++F P+ T+G+D + ++ K +KLQ+WDT
Sbjct: 9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFI--TTIGIDFKIRTIELDGKRIKLQIWDTA 66
Query: 362 GMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYA-ENAKIFLCGNKSDL 538
G ER ++T++YY+ A +L++ + + SF + + +A EN L GNK D
Sbjct: 67 GQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC 126
Query: 539 EGASPQVTDADIETFCEQCHNLVNSTYKTSCKTGKGIEEMFADIALQL 682
E QV+ + ++ L + S KT ++E F +A ++
Sbjct: 127 ED-QRQVSFEQGQALADE---LGVKFLEASAKTNVNVDEAFFTLAREI 170
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 67.3 bits (157), Expect = 3e-12
Identities = 45/169 (26%), Positives = 79/169 (46%)
Frame = +2
Query: 179 PVLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDT 358
P K++L G+ G GK++ +R + F ATLG++ + ++ +WDT
Sbjct: 8 PTFKLVLVGDGGTGKTTFVKRHLTGEF--EKKYIATLGVEVHPLHFHTNFGEICFNVWDT 65
Query: 359 GGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAENAKIFLCGNKSDL 538
G E++ + YY + I++F + + ++ + ++V EN I LCGNK D+
Sbjct: 66 AGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCGNKVDV 125
Query: 539 EGASPQVTDADIETFCEQCHNLVNSTYKTSCKTGKGIEEMFADIALQLV 685
+ + A TF + NL Y S K+ E+ F +A +LV
Sbjct: 126 K---ERKVKAKAITF-HRKKNL--QYYDISAKSNYNFEKPFLWLARKLV 168
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 53.6 bits (123), Expect = 4e-08
Identities = 28/117 (23%), Positives = 55/117 (47%)
Frame = +2
Query: 185 LKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTGG 364
+KV + G+ +GK+SL ++ +F S + TLG++ EK + + ++ +WD GG
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQ--TLGVNFMEKTISIRNTEITFSIWDLGG 68
Query: 365 MERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAENAKIFLCGNKSD 535
++ A A + +F L S+ + + + + + + A L G K D
Sbjct: 69 QREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYD 125
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 45.2 bits (102), Expect = 1e-05
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Frame = +2
Query: 188 KVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHF--EKLYQVADKDVKLQLWDTG 361
K+++ G+ G GK+ L F + TF +R +++ + Y K ++L LWDT
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTF---PERYVPTVFENYITDITYGPNSKVIELALWDTA 72
Query: 362 GMERIASVTSSYYKFAEAAILVFSLD-NASSFHILSQHLLEIVSYAENAKIFLCGNKSDL 538
G E + Y + +L FS+D AS ++ + E+ + I L G K+DL
Sbjct: 73 GQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADL 132
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 44.0 bits (99), Expect = 3e-05
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Frame = +2
Query: 161 MAVVKTPVLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVK 340
MA +K+ + V+ G VGKSSL +++ N FV T+ + F K + ++
Sbjct: 1 MAPIKSRRIAVL--GSRSVGKSSLTVQYVENHFV--ESYYPTIE-NTFSKNIKYKGQEFA 55
Query: 341 LQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSY--AENAKIF 514
++ DT G + + + S + +LV+S+ + SSF ++ +I+++ E I
Sbjct: 56 TEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIV 115
Query: 515 LCGNKSDL 538
+ GNKSDL
Sbjct: 116 VVGNKSDL 123
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 44.0 bits (99), Expect = 3e-05
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Frame = +2
Query: 320 VADKDVKLQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHI--LSQHLLEIVSY 493
V K++K +WD GG ++I + Y+ + L+F +D+A S I Q L I+S
Sbjct: 60 VTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKG--LIFVVDSADSNRISEARQELHRIISD 117
Query: 494 AE--NAKIFLCGNKSDLEGA-SP-QVTD 565
E + + + NK DL GA SP Q+TD
Sbjct: 118 REMRDCLLLVLANKQDLPGALSPAQITD 145
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 38.3 bits (85), Expect = 0.001
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Frame = +2
Query: 188 KVILCGEYGVGKSSLFRRFINNTFVPNSDRR--ATLGLDHFEKLYQVADKDVKLQLWDTG 361
KV+L G G GKSS+ R + + +V RR AT+ ++H + ++ L LWD G
Sbjct: 4 KVLLMGRSGSGKSSM-RSIVFSNYVAKDTRRLGATIDIEHSHVRFL---GNLVLNLWDCG 59
Query: 362 GMERIASVTSSYYK---FAEAAILVFSLD-NASSFH---ILSQHLLE-IVSYAENAKIFL 517
G E S + F +L++ D + F + ++ LE V+ + A++F
Sbjct: 60 GQEAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFC 119
Query: 518 CGNKSDL 538
+K DL
Sbjct: 120 LIHKMDL 126
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 38.3 bits (85), Expect = 0.001
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Frame = +2
Query: 185 LKVILCGEYGVGKSSLFRRFI---NNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWD 355
++V++CG+ GVGKSSL I N T +P ++ + ++ DV L L D
Sbjct: 4 VRVVICGDQGVGKSSLISALIQEDNVTSIPKVFPIISIPSN------PDSNDDVSLVLVD 57
Query: 356 TGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAENAKIFLCGNKSD 535
T ++ K A LV+S DN S + L S N I LC NKS+
Sbjct: 58 TQSDSNEREYLAAEIKKANVICLVYS-DNYSYERVSIFWLPYFRSLGVNVPIVLCENKSE 116
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 33.9 bits (74), Expect = 0.032
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Frame = +2
Query: 170 VKTPVLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQL 349
+K ++V+L G GK+++ + +N ++ T G ++ + + ++ +
Sbjct: 12 LKEREVRVLLLGLDNAGKTTILKCLLNEDV---NEVSPTFGF----QIRTLEVEGLRFTI 64
Query: 350 WDTGGMERIASVTSSYYKFAEAAI-LVFSLDN--ASSFHILSQHLLEIVSYAENAKIFLC 520
WD GG + + + +Y++ EA I +V SLD+ Q LL + I +
Sbjct: 65 WDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELL-VEEKLLFTSILVL 123
Query: 521 GNKSDLEGA 547
NKSD+ GA
Sbjct: 124 ANKSDVSGA 132
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 33.1 bits (72), Expect = 0.055
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +2
Query: 329 KDVKLQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAE--N 502
+++ +WD GG ++I + Y++ + I V ++ + L +++ E +
Sbjct: 59 RNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRD 118
Query: 503 AKIFLCGNKSDLEGA--SPQVTD 565
A + + NK DL A + ++TD
Sbjct: 119 ALLLVFANKQDLPNAMNAAEITD 141
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 30.3 bits (65), Expect = 0.39
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Frame = +2
Query: 149 KRQNMAVVKTPVLKVILCGEYGVGKSSLFRRFINNTFVPNSD---RRATLGLDHFE--KL 313
KR+N+ K L ++LCG G GK++ F + P + T+ E K
Sbjct: 19 KRENLIKRKECGLTIMLCGASGTGKTTFFNTLFATSLQPEKSYETAKETIAKKTLEVKKN 78
Query: 314 YQVADKD---VKLQLWDTGGMERIASVTSSYYKFAE 412
V ++D + L + DT G TS + AE
Sbjct: 79 KAVIEEDGFHINLTVLDTPGFGDFIDNTSCWNTVAE 114
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 29.5 bits (63), Expect = 0.68
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 473 NVDSKYETM-KHCPVKRPKLQLQQIYNSLMSPKLFFPYLQYP 351
N+D YE M + +KRPK + QQIY L+ P + F Q P
Sbjct: 96 NIDFFYEIMLRQVLLKRPKEESQQIY--LLRPAMVFFLAQAP 135
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 182 VLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLD 298
V ++++CG G GKSS F R+I N + A L LD
Sbjct: 331 VPRLMVCGPKGSGKSS-FSRYITNRLLQQYRHIAYLDLD 368
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 560 TDADIETFCEQCHNLVNSTYKTSCKTGKGIEEMFADI 670
+D DIE+FC H+L+ S Y+T K E+ A +
Sbjct: 323 SDFDIESFCFLLHHLL-SLYQTQKKELASSNELLASV 358
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 3.6
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Frame = +2
Query: 431 SLDNASSFHILSQHLLEIVSYAENAKIFLC---------GNKSDLEGASPQVTDADIETF 583
S+ + S H L+ + +++S + K F N DL+GA+ Q +
Sbjct: 467 SMQSPSKLHSLTSNATDLLSSSSLKKNFFSQQEADEVELSNNYDLQGAAVQYLQRRLRMV 526
Query: 584 CEQCHNLVNSTYKTSCKTGKGIEEMFADIALQLVEANRSRIELQALDQNSFKISNPD 754
++ H +NS ++ + +E+ + + L E + EL+ LD K N D
Sbjct: 527 EDELHEAINSKNVQQSRS-EELEQQISKLTDNLQEYRNTVRELK-LDLEKSKKKNED 581
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 307 EVVPSCGQRCQVAVMGYWRYGKNSFGDIKLL*IC*SCNFGLFTGQCFIVSYFES 468
++VP CG+ C + + GY +N F D G+ + F++ Y ES
Sbjct: 1058 KIVPKCGKNCYLHLHGYTE--RNQFSDPTSTNAAVGLIIGVGSFSPFLIPYEES 1109
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 4.8
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +2
Query: 275 RRATLGLDHFEKLYQVADKDVKLQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSF 454
R+ T+ D+ EK + + VK L D G R +V S E L+F L N S+
Sbjct: 5 RKQTIKNDYNEK---ITKRKVKNNLTD--GKARALTVFESLP--LEVLRLIFLLSNNSNL 57
Query: 455 HILSQHLLEIVSYAENAKIFL 517
+ S+ L +S N IF+
Sbjct: 58 AVTSRSLRHRLSLRNNTPIFM 78
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 521 HIKISLRFLHKIQFQVNVDSKYETMKH---CPVKRPKLQLQQIYNSLMSPKLFFPYLQ 357
H++ + +++I + +D+ + K+ C + KL+L Q ++ PK PY Q
Sbjct: 897 HMEFVNQVINEIDRYMRIDACMPSFKNIITCKSLKAKLRLAQTFHLEFGPKELLPYTQ 954
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 225 LFPTPYSPHKITFNTGVFTTAIFCLFFTINYF 130
LFP+ +P+K+ N + F +FF + Y+
Sbjct: 468 LFPSYQNPNKVEMNWAIVVLG-FTVFFCVGYY 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,389
Number of Sequences: 5004
Number of extensions: 73291
Number of successful extensions: 224
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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