Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I14
         (831 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    26   0.32 
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    25   0.74 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   5.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 130 SENTKCNGSSGYSKHSKEL 186
           SE T CNGS G S   +EL
Sbjct: 300 SEKTLCNGSKGISPEQEEL 318


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 5   LLPETKKRDGDFKVNFVLKIQ*KMSTIAAPLSVAGTRSCGDPVRTQNV 148
           L+ E K  D   ++N + K+    STIA  L V  TRS   P  T+ +
Sbjct: 18  LIDELKNEDVQLRLNSIKKL----STIALALGVERTRSELIPFLTETI 61


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 100 RQRCSYSRHFLLYF*HKIHFKIAVT 26
           RQR +Y+RH +L    + H+   +T
Sbjct: 235 RQRTAYTRHQILELEKEFHYNRYLT 259


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 100 RQRCSYSRHFLLYF*HKIHFKIAVT 26
           RQR +Y+RH +L    + H+   +T
Sbjct: 235 RQRTAYTRHQILELEKEFHYNRYLT 259


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 100 RQRCSYSRHFLLYF*HKIHFKIAVT 26
           RQR +Y+RH +L    + H+   +T
Sbjct: 235 RQRTAYTRHQILELEKEFHYNRYLT 259


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,147
Number of Sequences: 336
Number of extensions: 4368
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)