Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_I14
(831 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 159 3e-39
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 154 1e-37
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 152 4e-37
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 6e-19
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 90 2e-18
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 3e-15
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 73 2e-13
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 58 1e-08
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 51 1e-06
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 51 1e-06
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 9e-05
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8) 31 0.87
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_39103| Best HMM Match : PSI (HMM E-Value=0.0045) 30 2.0
SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17) 29 3.5
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 29 3.5
SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017) 29 4.6
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 28 8.1
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 159 bits (386), Expect = 3e-39
Identities = 88/223 (39%), Positives = 136/223 (60%), Gaps = 3/223 (1%)
Frame = +2
Query: 134 RTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVE 313
+ +++ +I+K+SLGP G+DKM+V G+VTVTNDGATIL M+EV+H AK++VE
Sbjct: 32 KQSHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVE 91
Query: 314 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKY---IQD 484
L++ QD E+GDGTT VV++A LL++A++L+ IHP I GY LA K A+++ I D
Sbjct: 92 LSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIAD 151
Query: 485 NLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYPIKA 664
N V ++ + SLI TA TT+ SK++ +E+ VDA ++ + + +
Sbjct: 152 NFPVDKDN--KESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVADLERKD---VDFEL 206
Query: 665 INILKAHGRSARESVLVKGYALNCTVXSQAMPXKILNAKIACL 793
I + G ++VLVKG ++ + MP + +AKIA L
Sbjct: 207 IKVEGKEGGKLDDTVLVKGVVVDKDMSHPQMPKVVKDAKIAIL 249
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 154 bits (373), Expect = 1e-37
Identities = 90/238 (37%), Positives = 142/238 (59%), Gaps = 4/238 (1%)
Frame = +2
Query: 125 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVD--DIGDVTVTNDGATILKMLEVEHPAA 298
+ R + + ++VKS+LGP G+DK+L G++ VTNDGATILK + +++PAA
Sbjct: 19 ETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGIDNPAA 78
Query: 299 KVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYI 478
K+LVEL+++QD+EVGDGTTSV ++ +ELLK A++LV KIHP +I++G+R + K A K +
Sbjct: 79 KILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKAL 138
Query: 479 QDNLT--VTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIY 652
+ + R L+N A+TT+SSK++ D F+++ VDA +K
Sbjct: 139 EAAAVDHSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGSG------- 191
Query: 653 PIKAINILKAHGRSARESVLVKGYALNCTVXSQAMPXKILNAKIACLDFSLQKTXMKL 826
+ AI I+K G +S L +G+ L+ + P KI NAKI + + +K+
Sbjct: 192 DLNAIQIIKKLGGGMVDSFLDEGFLLDKKIGVN-QPKKIENAKILIANTPMDADKIKV 248
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 152 bits (368), Expect = 4e-37
Identities = 68/114 (59%), Positives = 87/114 (76%)
Frame = +2
Query: 488 LTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYPIKAI 667
+T++V+ LGR +++ A T +SSKLIG DFF+ M+VDA A+K +G YPIKAI
Sbjct: 1 MTISVDELGRDCIVSAANTALSSKLIGQQGDFFANMIVDAVMAVKRTGNKGEAKYPIKAI 60
Query: 668 NILKAHGRSARESVLVKGYALNCTVXSQAMPXKILNAKIACLDFSLQKTXMKLG 829
N+LKAHG SA+ES+LV GYALNCT+ SQAMP ++ NAKIACLDF+LQK M LG
Sbjct: 61 NVLKAHGGSAKESILVDGYALNCTIASQAMPKQVTNAKIACLDFTLQKAKMHLG 114
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 91.9 bits (218), Expect = 6e-19
Identities = 38/83 (45%), Positives = 62/83 (74%)
Frame = +2
Query: 242 VTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIH 421
+TNDG IL+ ++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E + A+ ++ ++H
Sbjct: 1 MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60
Query: 422 PTSIISGYRLACKEAVKYIQDNL 490
PT II+ YRLA + + ++ +
Sbjct: 61 PTQIIAAYRLAMDDMIDILKQQI 83
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 90.2 bits (214), Expect = 2e-18
Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Frame = +2
Query: 314 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLT 493
L+++QD+EVGDGTTSV ++A+ELLK A++LV KIHP +I++G+R + K A K ++
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAV 61
Query: 494 --VTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYPIKAI 667
+ R L+N A+TT+SSK++ D F+++ VDA +K + AI
Sbjct: 62 DHSSDPEKFRDDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGSG-------DLNAI 114
Query: 668 NILKAHGRSARESVLVKG 721
I+K G +S L +G
Sbjct: 115 QIIKKLGGGMVDSFLDEG 132
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 86.6 bits (205), Expect = 2e-17
Identities = 45/115 (39%), Positives = 74/115 (64%)
Frame = +2
Query: 278 EVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLAC 457
+++HP A ++ +A QD+ GDGTTS V+I ELLK AD V +HP + G+ +A
Sbjct: 170 QIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAK 229
Query: 458 KEAVKYIQDNLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIK 622
K+A++ +++ + V+ E + R +LIN AKT++ +K+ AD +E+VVDA I+
Sbjct: 230 KKALEVLEE-VKVSRE-MDRDTLINVAKTSLRTKVRTELADLLTEVVVDAVLTIR 282
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 79.8 bits (188), Expect = 3e-15
Identities = 32/72 (44%), Positives = 54/72 (75%)
Frame = +2
Query: 275 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 454
++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E + A+ ++ ++HPT II+ YRLA
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268
Query: 455 CKEAVKYIQDNL 490
+ + ++ +
Sbjct: 269 MDDMIDILKQQI 280
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/74 (44%), Positives = 50/74 (67%)
Frame = +2
Query: 116 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPA 295
S G P N+ + V+++LGP G+DK++VD G T++NDGATI+ +L++ HPA
Sbjct: 651 SQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATIINLLDIVHPA 710
Query: 296 AKVLVELAQLQDEE 337
AK LV++A+ QD E
Sbjct: 711 AKTLVDIAKSQDAE 724
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/72 (37%), Positives = 43/72 (59%)
Frame = +2
Query: 173 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGT 352
I+K S GP GLD ML G++ +TN G+ IL+ L + +P +++VE A+ G G
Sbjct: 15 ILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGA 74
Query: 353 TSVVIIAAELLK 388
+ +II AE+ +
Sbjct: 75 SYFIIILAEIFR 86
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 51.2 bits (117), Expect = 1e-06
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +2
Query: 131 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI--LKMLEVE-HPAAK 301
+R N+ + +++SLGP G+DKM+ GDVT+TNDGATI + +++E P K
Sbjct: 25 IRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATIKLIDTVDLEGGPVGK 84
Query: 302 VLVELAQLQDEEVGD 346
+V A + G+
Sbjct: 85 PVVPAALMNRPTRGE 99
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 50.8 bits (116), Expect = 1e-06
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Frame = +2
Query: 122 GDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEV----EH 289
G R + + V +LGP G + ++ G +T DG T+ K +E+ ++
Sbjct: 65 GAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIELKDKYQN 124
Query: 290 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS-----GYRLA 454
A+++ ++A +EE GDGTT+ ++A + V +P + S GY A
Sbjct: 125 IGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVSSLENAMGYDAA 184
Query: 455 CKEAVKYIQDNL--------TVTVESLGRPSLINTAKTTM 550
V IQ + T ++ G SL+ TA+T +
Sbjct: 185 NNTYVDMIQAGIIDPTKVVRTAITDAAGVASLLTTAETVI 224
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 44.8 bits (101), Expect = 9e-05
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Frame = +2
Query: 515 RPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYPIKAINILKAHGRS 694
R L A T +SSKLI +FF++MVVDA + + + P+ I + K G +
Sbjct: 21 RQLLERCAATALSSKLIATQKEFFAKMVVDAVMML-------DELLPLDMIGMKKVSGGA 73
Query: 695 ARESVLVKGYALNCT---VXSQAMPXKILNAKIACLDFSLQ 808
+S+L++G A T + P + KIA L+ L+
Sbjct: 74 LEDSMLIEGVAFKKTFSYAGFEMQPKTYNHCKIALLNVELE 114
>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
Length = 922
Score = 31.5 bits (68), Expect = 0.87
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 374 AELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTVESLGRPSLI-NTAKTTM 550
A LL A+ ++ ++HP+S + A + + +TV V+ RPS +T KTT
Sbjct: 121 ASLLPRAESVLSKQVHPSSADGNNKGANDSSSDKVSSEVTVPVDEDIRPSTAGDTDKTTT 180
Query: 551 SSKLIGADADFFSEMVVDAAQA 616
S ++ ++ D QA
Sbjct: 181 DSSADNVTSEVTVQVDEDNKQA 202
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 377 ELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 490
E + A+ ++ ++HPT II+ YRLA + + ++ +
Sbjct: 3 EFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40
>SB_39103| Best HMM Match : PSI (HMM E-Value=0.0045)
Length = 319
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 604 CCTGNQNNEPQRKYYIPYQSY*HSESPRPECKGKCTCQRLCSELHCX-ITGNAEXDSQCK 780
C +++++ K ++ Y HSE + ECK +C + S +C G DS CK
Sbjct: 14 CAFASKDSDWTTKDLKLFERYFHSEILKNECKQALSCNKCNSNSNCRWCMGEDGADSICK 73
>SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)
Length = 197
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 329 DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTVES 508
DE+V DG I+AAE + + + PTS+ +GY +A V+ I + + +
Sbjct: 98 DEDVPDGAP---IVAAEAVNSTSLRINCTTLPTSVANGYVIAFNVYVESIDGSHKLIEKK 154
Query: 509 LGRPSLI-NTAKTTM 550
G S++ + K TM
Sbjct: 155 DGLTSVVPSLQKFTM 169
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -3
Query: 253 IVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYILCSHWVSA----GSCPC 104
+ +PN + + T PKG Y C +C + C H + G+C C
Sbjct: 70 VTQGTTVPNAIEGEICNTRCPKGYYGYGCSKKCSN---CQHGATCDPVNGTCSC 120
>SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)
Length = 472
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -3
Query: 262 CGTIVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYILCSHWV 125
C + +DCN L +G CY CC LC+++V
Sbjct: 388 CSVVSADCNENGTRCDRLTSVLKDRGLTLKNCYVNCCQGDLCNNFV 433
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +2
Query: 209 KMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGTTS--VVIIAAEL 382
K L DD+GD+ + + + +E H A + + V DG V + E
Sbjct: 285 KGLFDDVGDMGHKELKSVVKRSMEEHHAKAASAYFMRYFNEYRVSDGLLDGPFVKMGVET 344
Query: 383 LKNADELVKTKIHPTSI 433
+K + VK I T I
Sbjct: 345 VKETMQFVKQMIKSTGI 361
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,926,935
Number of Sequences: 59808
Number of extensions: 550727
Number of successful extensions: 1267
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -