Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I13
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0252 + 8323087-8323523,8323929-8324019,8324155-8324281,832...    29   4.9  
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548...    28   6.5  
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898...    28   6.5  
04_04_0680 - 27217563-27220088                                         28   6.5  
04_04_0836 + 28546414-28547001                                         28   8.6  
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982...    28   8.6  

>02_02_0252 +
           8323087-8323523,8323929-8324019,8324155-8324281,
           8324469-8324623
          Length = 269

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 309 RSTGERDVADVGRMSSRHRLVDDEGAARR 223
           ++TG  D+A    M ++H L+  EGAA R
Sbjct: 241 KATGGADIATAASMQAKHELLACEGAAMR 269


>11_01_0671 -
           5479240-5479286,5480399-5480588,5480669-5480824,
           5481005-5481931
          Length = 439

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 470 ETRATHTRTPALVSLRLGSCWRR 538
           E   TH   P L++LRL  CW R
Sbjct: 212 EHHRTHIYAPNLITLRLDDCWGR 234


>06_01_1095 +
           8984363-8984789,8985175-8985416,8985500-8985622,
           8985783-8985899,8986258-8986399,8986587-8986627,
           8987194-8987453,8987505-8987607,8987698-8987776,
           8987856-8988115
          Length = 597

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 488 TRTP-ALVSLRLGSCWRRTKVGRCWN 562
           T+ P + VSLR+G C  R K GRC++
Sbjct: 513 TKLPFSFVSLRIGMCKDRLKKGRCFS 538


>04_04_0680 - 27217563-27220088
          Length = 841

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = -1

Query: 196 AKTLGGLPLHSQSRGLHQLCXXXXXXXXXXXXXRPSGTAPGTPWPRRYLIAARGACGCTG 17
           A++ GG+ +   SRGL ++               P        +PR Y  A    CGC G
Sbjct: 555 AESYGGIIIKDISRGLEKI-PVSVVNSISDEYPMPYRYIAHLQYPRNYQPAPPAGCGCVG 613

Query: 16  VCA 8
            C+
Sbjct: 614 GCS 616


>04_04_0836 + 28546414-28547001
          Length = 195

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 330 VLKTAKARSTGERDVADVGRMSSRHRLVDDEGAA-RRAPASCRLHLPKLLEGFHYI 166
           VL TAK      R  ADV        + DDE A    +PA  +L +  L EG  ++
Sbjct: 112 VLLTAKPEGDFPRRQADVVAHLPAQTMADDEEATTESSPAKAKLPMGSLYEGAMFV 167


>03_02_0609 -
           9823120-9823573,9823903-9824102,9824240-9824335,
           9824454-9824567,9824711-9824774,9825206-9825312
          Length = 344

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -2

Query: 279 VGRMSSRHRLVDDEGAARRAPASCRLHLPKLLEGF 175
           VGR+SSR R  D E    R   SC   L  L+EGF
Sbjct: 15  VGRLSSRTRSRDLEYLFGRYGRSCVFDLNDLVEGF 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,043,797
Number of Sequences: 37544
Number of extensions: 307014
Number of successful extensions: 975
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)