Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_I13
(721 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.) 247 6e-66
SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3) 31 1.2
SB_57871| Best HMM Match : RVT_1 (HMM E-Value=0.0029) 30 1.6
SB_45859| Best HMM Match : RVT_1 (HMM E-Value=0.0014) 30 1.6
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 30 1.6
SB_22668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14) 30 1.6
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 30 1.6
SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08) 30 1.6
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) 30 1.6
SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097) 30 1.6
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07) 30 1.6
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_25300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_43452| Best HMM Match : RVT_1 (HMM E-Value=0.0056) 29 2.9
SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16) 29 2.9
SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12) 29 2.9
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14) 29 2.9
SB_1136| Best HMM Match : HC2 (HMM E-Value=4.2) 29 2.9
SB_17286| Best HMM Match : RVT_1 (HMM E-Value=1.5e-05) 29 3.8
SB_15141| Best HMM Match : RVT_1 (HMM E-Value=1.1) 29 3.8
SB_56521| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66) 28 8.8
>SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 247 bits (605), Expect = 6e-66
Identities = 120/194 (61%), Positives = 142/194 (73%), Gaps = 10/194 (5%)
Frame = +1
Query: 163 VNVVEALQEFWQVKXXXXXXXXXXXLVIYESVPAAHPPYVCYVTLPGGACFGSFQNCPTK 342
VNV++AL+EFW +K V YE A PPYVC+VTLPGG+CFGSFQ CPTK
Sbjct: 167 VNVIDALEEFWNMKKAKGAKFKTGDCVSYEPGSAEKPPYVCFVTLPGGSCFGSFQPCPTK 226
Query: 343 AEARRSAAKIALMNSVFNEHESRRISDHFIEKAVAEA----------RASFAGDTSNPHQ 492
AEA+RSAAKIALMNSVFNEH SR+I+D FI++AV EA R + + +PH
Sbjct: 227 AEAKRSAAKIALMNSVFNEHPSRKITDDFIDQAVHEAQGTEAKVAAKRRTMSLKPQDPH- 285
Query: 493 DPSAGIAAFRFMLEANKGRTMLEFQELMTVFQLLHWNGSLXAMRERQCSRQEVVXHYSAR 672
+P+ G+ AFRFMLEANKGRTMLEFQELMT+FQLLHWNGSL AMR+R CSRQEV HY+ R
Sbjct: 286 NPNTGVGAFRFMLEANKGRTMLEFQELMTIFQLLHWNGSLKAMRDRNCSRQEVFAHYNER 345
Query: 673 ALXDAMREQMAREW 714
+ D MR QMA +W
Sbjct: 346 IIDDDMRSQMALDW 359
>SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)
Length = 275
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 238 LVIYESVPAAHPPYVCY 288
+V+ E +P HPPY+CY
Sbjct: 95 IVVQEDLPTIHPPYLCY 111
>SB_57871| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
Length = 195
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 22 KYCQRETYATESPFQLARRIANDTWKTVTDAWNGYHSVPLRSSDRHLTTFITLFGRW 78
>SB_45859| Best HMM Match : RVT_1 (HMM E-Value=0.0014)
Length = 471
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 329 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 385
>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
Length = 1590
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 677 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 733
>SB_22668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 214 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 270
>SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14)
Length = 1447
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 645 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 701
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 382 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 438
>SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08)
Length = 1201
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 679 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 735
>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
Length = 1253
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 665 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 721
>SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097)
Length = 812
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 737 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 793
>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
Length = 493
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 234 KYCQRETYATESPFQLARRILNDTWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 290
>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1552
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L I G W
Sbjct: 660 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 716
>SB_25300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 333 AVLKTAKARSTGERDVADVGRMSSRHRLVDDE 238
A+ K K R TGER +VG + +R+VD+E
Sbjct: 60 ALEKIRKFRETGERTKFEVGSVKDVYRVVDEE 91
>SB_43452| Best HMM Match : RVT_1 (HMM E-Value=0.0056)
Length = 437
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L + G W
Sbjct: 188 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFLTPFGRW 244
>SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 913
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL S +L I G W
Sbjct: 22 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRLSDRHLTTFITPFGRW 78
>SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12)
Length = 1067
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL S +L I G W
Sbjct: 603 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRLSDRHLTTFITPFGRW 659
>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
Length = 865
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W TV +WN PL +S +L + G W
Sbjct: 126 KYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVPLRSSDRHLTTFLTPFGRW 182
>SB_1136| Best HMM Match : HC2 (HMM E-Value=4.2)
Length = 551
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 567 LEFQHRPTFV--RLQHEPKRSDTSAGVLVWVARVSGEGR 457
+ Q P +V R + K +D++ VLVW+ARVS GR
Sbjct: 152 IRIQTNPCYVYGRRKRIEKYTDSNESVLVWMARVSVYGR 190
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 537 RLQHEPKRSDTSAGVLVWVARVSGEGR 457
R + K +D++ VLVW+ARVS GR
Sbjct: 190 RRKRTEKYTDSNESVLVWMARVSVYGR 216
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 537 RLQHEPKRSDTSAGVLVWVARVSGEGR 457
R + K +D++ VLVW+ARVS GR
Sbjct: 73 RRKRMEKYTDSNESVLVWMARVSVYGR 99
>SB_17286| Best HMM Match : RVT_1 (HMM E-Value=1.5e-05)
Length = 288
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 638 EHC-RSRIAXSDPFQWS------SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
++C R A PFQ + +W T+ +WN PL +S +L I G W
Sbjct: 82 KYCQRETYATESPFQLARRIPNDTWKTLTDAWNGYHSVPLRSSDRHLTTFITPFGRW 138
>SB_15141| Best HMM Match : RVT_1 (HMM E-Value=1.1)
Length = 402
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 590 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 489
+W TV +WN PL +S +L I G W
Sbjct: 295 TWKTVTDAWNGYHSVPLSSSDRHLTTFITPFGRW 328
>SB_56521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 475 TSNPHQDPSAGIAAFRFMLEANKGRT-MLEFQELMTVF 585
T+ H D SA +RF LE + RT +L+F L VF
Sbjct: 80 TAGSHLDVSATHVIYRFSLERKRKRTQLLDFLALALVF 117
>SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)
Length = 806
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 228 RRAPASCRLHLPKLLEGFH 172
R+AP R HLP LL FH
Sbjct: 13 RKAPCKLRQHLPALLANFH 31
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,329,786
Number of Sequences: 59808
Number of extensions: 314921
Number of successful extensions: 897
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -