Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I13
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC098856-5|AAR12980.1|  263|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 639 RALPLAHRXQRPVPVEQLEYRHQLLEFQHRPTFVRLQHEPKRSDT 505
           RA+P+ HR Q   P    +++ +L    H     RL  + + +DT
Sbjct: 38  RAVPVGHRRQHSSPGHLQQFQQELHARHHHANITRLNKKRRNTDT 82


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 639 RALPLAHRXQRPVPVEQLEYRHQLLEFQHRPTFVRLQHEPKRSDT 505
           RA+P+ HR Q   P    +++ +L    H     RL  + + +DT
Sbjct: 99  RAVPVGHRRQHSSPGHLQQFQQELHARHHHANITRLNKKRRNTDT 143


>AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical
           protein Y63D3A.10 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 236 PSSSTSLCRLLIRPTSATSRSPVERALAVFKTAQLKRKQDAAPL 367
           P  S  L RL +  + A S+ P  R  A     +LKR+QD  PL
Sbjct: 185 PQKSFFLLRLSL--SYALSQEPHSRPTATLAARRLKRRQDTQPL 226


>AC098856-5|AAR12980.1|  263|Caenorhabditis elegans Hypothetical
           protein Y37F4.5 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 542 LFASSMNLNAAIPALGSWCGLLVSPAKDARASA 444
           +  SS+NL++ +P  GSW G   + + D  A+A
Sbjct: 134 IMGSSLNLDSMLPIAGSWMGTQKTRSIDLVATA 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,971,522
Number of Sequences: 27780
Number of extensions: 218409
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)