Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I09
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    27   6.5  
08_02_0340 + 15981210-15981467                                         27   8.7  

>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
            19387454-19388884,19388953-19389118,19392035-19392114,
            19392393-19392462,19392550-19392761,19392837-19392890,
            19393471-19393623,19393715-19393930,19394029-19394248,
            19394332-19394399,19394510-19394643,19394755-19394854,
            19394943-19395421,19395506-19395699,19396270-19396355,
            19396364-19396444,19396842-19397023,19397305-19397346,
            19398247-19398558,19399374-19399434,19399435-19399617,
            19399744-19399863,19400380-19401051,19402597-19402668,
            19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 67   LKMPNXTVGHSRQDNFRFHRP 5
            L  P+ ++GH+R+D FR  +P
Sbjct: 1551 LNTPSASIGHTRRDTFRQRKP 1571


>08_02_0340 + 15981210-15981467
          Length = 85

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 91  MAGESAVSTASKPQMR-GLLNAVIKRNIIVALALSGVAGFT 210
           MA   A    ++PQ+R GL+ A I  ++I ALA  GV G T
Sbjct: 1   MATTLADEKQNQPQIRFGLIVACILLDVIPALAAEGVDGDT 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,839,514
Number of Sequences: 37544
Number of extensions: 147908
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)