Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I09
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)                   54   5e-08
SB_34530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  

>SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)
          Length = 187

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 26/60 (43%), Positives = 39/60 (65%)
 Frame = +1

Query: 118 ASKPQMRGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 297
           A  PQ+RG++   +K++I+ A     VAG  +K L  +  K+KYA+FY+ YDAEK  +EM
Sbjct: 121 AMAPQLRGIVVRTLKKDILHASIAGIVAGCAWKFLYADPLKKKYADFYKNYDAEKVAKEM 180


>SB_34530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 252 SILSLALITNELL-EGKTSDARESQSNNNVTFDDGVEETSHLRLARCR 112
           +++ +AL T  +L EGKT  A      N   F +   + SHL + +C+
Sbjct: 197 TVILVALATAVILFEGKTVHALHFYHGNGQPFSEPAAKCSHLAVTKCQ 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,432,017
Number of Sequences: 59808
Number of extensions: 172963
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)