Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I08
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06
SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             49   3e-06

>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/28 (78%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = +2

Query: 284 CGVISPRFDVPINDIERW-TNLLPSRQF 364
           CGVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 1   CGVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = +1

Query: 70  MVRMNVLSDALKSIHNAEKRGKRQVLIRP 156
           MVR+NVL+DAL SI NAEKRGKRQV IRP
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRP 29



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 167 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN-LTGRLNKCGVISPR 304
           VIVKFLTVMMKH        V   R G++V    +G L+  GV+  R
Sbjct: 33  VIVKFLTVMMKH--------VAQPRIGEMVTRPCSGALSAAGVVVTR 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,734,862
Number of Sequences: 59808
Number of extensions: 246239
Number of successful extensions: 1127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)