Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I07
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11785| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-28)          31   0.43 
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               29   1.8  
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)              28   2.3  
SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14)                   28   2.3  
SB_51758| Best HMM Match : MNNL (HMM E-Value=1.2)                      27   4.0  
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)           27   4.0  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            27   5.3  
SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071)         27   5.3  
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)                    27   7.1  
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_38536| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-23)                 26   9.3  
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  

>SB_11785| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-28)
          Length = 297

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 14/63 (22%), Positives = 32/63 (50%)
 Frame = +2

Query: 131 LQLPATPFPTFHPYQYLPSTALRSPASTHKSHTQMIISFVNKMLK*IHTSGTSSVTINKI 310
           +++P  P P +H  +Y  +   RS +   + H Q +    +++++ + T     VT+N++
Sbjct: 78  VRVPGKPRPKWHSDKYAETPDARSLSQGCRPHLQHLYFSEDRVVRLLFTLSDRLVTVNRV 137

Query: 311 YCC 319
             C
Sbjct: 138 VGC 140


>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 150 GVAGSCSVRQRHHIRVGRRAGEESQHCDQKRLK 52
           G  G   VRQR+ +R G +     QHCD+ RLK
Sbjct: 127 GDRGGVGVRQRYPVRGGGK-----QHCDEARLK 154


>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
          Length = 1171

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 160 VSSLSVPTVYSSAFTGFYPQI--AYANDYIFRK*NVKVNTYIWN--FFCYD 300
           + S+S+P   S    GF PQ+  +Y   +I R+ N+   T I+N  +F YD
Sbjct: 608 IPSVSMPVQSSQVVLGFLPQVTDSYLTRHIDRELNLS-KTAIYNSVYFAYD 657


>SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14)
          Length = 327

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 127 YAATAGYPLSYVSSLSVPTVYSSAFTGFYPQ 219
           Y A  GYP+     +  P  Y  A  G YPQ
Sbjct: 295 YPAQGGYPMQPQGQMPPPPSYGQATAGQYPQ 325


>SB_51758| Best HMM Match : MNNL (HMM E-Value=1.2)
          Length = 326

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 152 FPTFHPYQYLPSTALRSPASTHKSHTQMIISFVN 253
           F    P  YLP T   SPA +H S T   + F N
Sbjct: 84  FAAAPPCTYLPYTTSLSPALSHLSKTSSFLLFNN 117


>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
          Length = 597

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 14  VQSNLASDKVSKCLRRF*SQCWLSSPARRPT 106
           ++  L +D     + +F  QCW   P+ RPT
Sbjct: 528 LRPTLNADDCDPTITKFIKQCWSEEPSARPT 558


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 83  SSPARRPTRMWCLCRTLQLPATPFPTFHPYQYLPSTALRSPASTHKSHTQMIISFVNKML 262
           +SP R P   +   R  Q P TP P +   + + S     P   H   TQ+   F+ ++L
Sbjct: 166 NSP-RTPFLAYTSPREHQSPRTPLPAYFTPRVIHSPRTPLPRVLHSPRTQLPAYFIPRVL 224


>SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071)
          Length = 482

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 26  LASDKVSKCLRRF*SQCWLSSPARRPTRMWCLCRTLQ-LPATPFPTFHPYQYLPSTALRS 202
           L  D + + L R   + WL    R   + W LCR+L  + ATP    H   Y+P  + R+
Sbjct: 382 LCRDYIKQWLCRDYIKQWL---CRDYIKQW-LCRSLMTVLATPCSLAHTLSYIPQVSARA 437

Query: 203 PASTHK 220
             S  +
Sbjct: 438 QGSVQE 443


>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
          Length = 406

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 106 PYVVPLPY---AATAGYPLSYVSSLSVPTVYSSAFTG 207
           PY  P P    AA A YP +YVSS +  T  +S+F G
Sbjct: 104 PYPAPYPATYSAAPAAYPAAYVSSAT--TYDTSSFGG 138


>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +2

Query: 131 LQLPATPFPTF----HPYQYLPSTALRSPASTHKSHTQMIISFVNKMLK*IHTSGTSSVT 298
           L  P+TP PT     H Y  L    L +P++   +H +   ++  +    +HT  T + T
Sbjct: 52  LHTPSTPTPTHAENTHAYTRLVHPRLHTPSTPTATHAEYTHAYKRRAHPRLHTPTTHTPT 111


>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +2

Query: 131 LQLPATPFPTF----HPYQYLPSTALRSPASTHKSHTQMIISFVNKMLK*IHTSGTSSVT 298
           L  P+TP PT     H Y  L    L +P++   +H +   ++  +    +HT  T + T
Sbjct: 52  LHTPSTPTPTHAENTHAYTRLVHPRLHTPSTPTATHAEYTHAYKRRAHPRLHTPTTHTPT 111


>SB_38536| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-23)
          Length = 389

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
 Frame = +1

Query: 37  QSIKMFKAFLI---TMLALFA-C---AAADPYVVPLP-YAATAGYPLSYVSSLSVPTVY 189
           Q IKMF+ FLI   T L  F  C      DP  V +P + A     L+Y++S   P +Y
Sbjct: 188 QDIKMFRTFLIIIGTFLVSFTPCFIVILLDPLGVRVPGFLAYLFVVLTYINSALEPLIY 246


>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 131 LQLPATPFPTFHPYQYLPSTALRSPASTHKS 223
           L LP+TP  T HP  Y  +  L    ST+++
Sbjct: 100 LYLPSTPLLTEHPSTYRATLLLTEHPSTYRA 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,293,555
Number of Sequences: 59808
Number of extensions: 203368
Number of successful extensions: 682
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)