Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I04
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   1.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   5.3  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    25   7.1  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   7.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.1  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   9.3  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   9.3  

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 496 EPWHGQSQTSARSSPTTA 443
           +PWH  S   A SSPT+A
Sbjct: 80  QPWHSNSAAPASSSPTSA 97


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 260 VLSDSRRNQSLSADLLFCTYFMSAWYSSFNLFTHSSL 150
           VLS SR   SL  D+L      + W  S+N+   SSL
Sbjct: 351 VLSQSRNIFSLYIDILMEALRRTEWQESYNVSHDSSL 387


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +1

Query: 316 FDLEFDIPITYPKTAPEIALPGLDGKTAKMYRGGKICLTDHFKPLW-ARNVPR----FGI 480
           F LE +IP   P+    +        T  +Y+G +I   D  K LW  + +P      G+
Sbjct: 30  FSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKGSRILPKDSDKVLWYPQTIPNACGTIGL 88

Query: 481 AHAMALG 501
            HA++ G
Sbjct: 89  LHAVSNG 95


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 504 QPKSHGMGNPKPRHVPRPQRLEMI 433
           QP+ +G  NP+P    +PQR  M+
Sbjct: 446 QPQQNGFFNPQPTGYMQPQRTGMM 469


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 428 RHILPPRYIFAVLPSRPGRAISGAV 354
           R I PPR + + + S  GR +SG++
Sbjct: 65  RPIPPPRQVSSTIGSSTGRKVSGSI 89


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 434 SVRHILPPRYIFAVLPSRPGRA 369
           SVR++LP R + A+  S+P  A
Sbjct: 466 SVRYVLPNRLLIAIAASKPVEA 487


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 547 LSRSSPVFPPPARDPAQEPWHGQSQTSARSSP 452
           +  SS + PPP+ DP   P    S +  RSSP
Sbjct: 89  IDSSSSMLPPPSSDPFSSP---LSSSLHRSSP 117


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 163  VNRLKEEYQALIKYVQNNKSADNDWFRLESDKTGTRWF 276
            V + KEE + L  Y  + KS  N W R  +++ G  ++
Sbjct: 1367 VQQAKEEMETLFSYKTSGKSLLNIW-RTPNERPGRHFY 1403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,934
Number of Sequences: 5004
Number of extensions: 59901
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)