Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_I04
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0018 + 7118104-7118436,7118543-7118767 214 4e-56
05_04_0303 - 20010761-20011756 29 4.2
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 5.5
12_02_1249 - 27331801-27331896,27331984-27332072,27334020-273340... 28 7.3
10_08_0109 + 14862249-14862320,14862366-14862390,14864249-14864436 27 9.7
08_02_1448 - 27168389-27172021 27 9.7
07_03_1106 + 24017601-24019955 27 9.7
06_03_0716 - 23831590-23832159 27 9.7
05_04_0036 + 17386160-17386318,17386588-17386651,17387089-173871... 27 9.7
>10_03_0018 + 7118104-7118436,7118543-7118767
Length = 185
Score = 214 bits (523), Expect = 4e-56
Identities = 92/141 (65%), Positives = 109/141 (77%), Gaps = 1/141 (0%)
Frame = +1
Query: 142 PGHKELWVNRLKEEYQALIKYVQNNKSADNDWFRLES-DKTGTRWFGKCWFVHNLLKYEF 318
P E W RLKEEY+ALI Y NKS DNDWFR+ + + GTRW G CW+VHNL +YEF
Sbjct: 24 PRDGEAWRQRLKEEYRALIAYTSVNKSKDNDWFRISAANPEGTRWEGTCWYVHNLRRYEF 83
Query: 319 DLEFDIPITYPKTAPEIALPGLDGKTAKMYRGGKICLTDHFKPLWARNVPRFGIAHAMAL 498
L+FDIP+ YP+ APEI LP LDGKT KMYRGGKICLT HFKPLWA+N PRFGIAHA+ L
Sbjct: 84 PLQFDIPVAYPQVAPEIELPTLDGKTHKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCL 143
Query: 499 GLGPWLAVEIPEMIEKGVVTY 561
GL PWLA E+P +++ G+V +
Sbjct: 144 GLAPWLAAEVPILVDSGMVKH 164
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 84 DEGTKRTLSSIPLLQTKAGPRAQGAMGEQIK 176
D+GTK + IPLL T+AGPR A +++K
Sbjct: 5 DKGTKSVVGEIPLLSTRAGPRDGEAWRQRLK 35
>05_04_0303 - 20010761-20011756
Length = 331
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 441 QAVVGEERAEVWDCPCHGSWAGSLAGGGNTGDD 539
Q+++ + A +D P HG G GGG G D
Sbjct: 28 QSLITPDLAVAFDIPTHGGGGGGGVGGGVVGGD 60
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 289 FVHNLLKYEFDLEFDIPITYPKTAPEIALPGLDG 390
F NLL +FD+ T+P PE A G DG
Sbjct: 797 FPRNLLLGSLPPDFDVICTHPMFGPESARDGWDG 830
>12_02_1249 -
27331801-27331896,27331984-27332072,27334020-27334083,
27334208-27334336,27334554-27334607,27334712-27334741
Length = 153
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/88 (25%), Positives = 37/88 (42%)
Frame = +1
Query: 166 NRLKEEYQALIKYVQNNKSADNDWFRLESDKTGTRWFGKCWFVHNLLKYEFDLEFDIPIT 345
NRL++E L ++ ++ + N W + GT + G+ + L+ D P
Sbjct: 18 NRLQKE---LAEWQMDSYDSPNRWVIEVTGAAGTLYAGET----------YQLQVDFPEH 64
Query: 346 YPKTAPEIALPGLDGKTAKMYRGGKICL 429
YP AP++ +Y G ICL
Sbjct: 65 YPMEAPQVIFLNPAPMHPHIYSNGHICL 92
>10_08_0109 + 14862249-14862320,14862366-14862390,14864249-14864436
Length = 94
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 641 IYTIILFTYNFIYNVQFVHFASSVFSLYVTTPFSIISGISTASQGPS 501
+Y +I +IY +F S LY +TP SI + + + PS
Sbjct: 19 VYKLIKIYLAYIYKGKFYSTLSKTSCLYGSTPRSIKASTTNVDKAPS 65
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 465 HVPRPQRLEMISEA--YLATSVHLRCLTVKTGQGYFWCGLWICYRYVKL 325
H+P ++E YL + + C T +G GLW C+ +V++
Sbjct: 968 HIPTTLQVEANQGQLEYLRSLSLVNCFTAASGSSEMRLGLWKCFAFVEV 1016
>07_03_1106 + 24017601-24019955
Length = 784
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -2
Query: 526 FPPPARDPAQEPWHGQSQTSARSSP 452
FP P R PA P SQ SA SSP
Sbjct: 7 FPLPLRAPAPPPSSPISQASAHSSP 31
>06_03_0716 - 23831590-23832159
Length = 189
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 562 CT*QRLSRSSPVFPPPARD 506
C+ LSR SP PPPAR+
Sbjct: 33 CSTTHLSRDSPAAPPPARN 51
>05_04_0036 +
17386160-17386318,17386588-17386651,17387089-17387147,
17387268-17387343,17387521-17387592,17387786-17387873,
17387992-17388250,17388446-17388561,17388876-17389096,
17389196-17389224,17389285-17389420,17389567-17389651,
17389735-17389963
Length = 530
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 139 DPGHKELWVNRLKEEYQALIKYVQNNKSADN 231
DP EL + L+E+Y L+ Y+Q N S N
Sbjct: 401 DPRGLELALEYLQEKYGNLLFYIQENGSGSN 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,231,242
Number of Sequences: 37544
Number of extensions: 424429
Number of successful extensions: 1847
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1840
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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