Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I04
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28801| Best HMM Match : No HMM Matches (HMM E-Value=.)             171   4e-43
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          32   0.35 
SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)               27   9.9  

>SB_28801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score =  171 bits (416), Expect = 4e-43
 Identities = 76/101 (75%), Positives = 84/101 (83%)
 Frame = +1

Query: 109 AASLYCRLKQDPGHKELWVNRLKEEYQALIKYVQNNKSADNDWFRLESDKTGTRWFGKCW 288
           AA    + K  P   + WV+RLKEEY +LIKYV NNK ADNDWFRLES+K GTRWFGKCW
Sbjct: 41  AAIPLLKTKAGPRDGKDWVDRLKEEYTSLIKYVSNNKEADNDWFRLESNKEGTRWFGKCW 100

Query: 289 FVHNLLKYEFDLEFDIPITYPKTAPEIALPGLDGKTAKMYR 411
           ++HNLLKYEFD+EFDIPITYP TAPEIALP LDGKTAKMYR
Sbjct: 101 YIHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYR 141



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/44 (50%), Positives = 29/44 (65%)
 Frame = +3

Query: 69  PLIMVDEGTKRTLSSIPLLQTKAGPRAQGAMGEQIKRRVPSAHK 200
           P  MVDE TK+TL++IPLL+TKAGPR      +++K    S  K
Sbjct: 28  PSKMVDEATKKTLAAIPLLKTKAGPRDGKDWVDRLKEEYTSLIK 71


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 547 LSRSSPVFPPPARDPAQEPWHGQS-QTSARSSPTTA*ND 434
           L R SP  PPP R P  +   G+S + S  S PT + ND
Sbjct: 605 LGRQSPESPPPPRTPGHDSSSGESGEISLPSPPTPSNND 643


>SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -3

Query: 603 QCSICSFRFLSLLFVRDNAFLDHLRYFHRQPGTQPKSHGMGNPKPRHVPRPQRLEMISEA 424
           +CSIC+++F+S   +R +  + H  YF  + G Q  +   G P    + +P  +    + 
Sbjct: 280 KCSICNWKFISSSNLRTHIRIHH-SYFTDKAGNQ-VTQPNGKPINPDLAKPDTMPQTQQV 337

Query: 423 Y 421
           Y
Sbjct: 338 Y 338


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 560 YVTTPFSIISGISTASQGPSPRAMAWAIPNLG-TFLAH 450
           +VTT  S  S  + +S+GP+P    WAI + G  F++H
Sbjct: 577 WVTT-LSTASARANSSEGPAPYKALWAITSCGDVFVSH 613


>SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)
          Length = 402

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 550 RLSRSSPVFPPPARDPAQEPWHGQSQTSARSSPT 449
           R   S P FPPP +      W   ++++    PT
Sbjct: 343 RERESKPTFPPPLKPSPNRRWRAPARSATVGKPT 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,787,664
Number of Sequences: 59808
Number of extensions: 480302
Number of successful extensions: 1689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)