Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I04
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19154-5|CAA79557.1|  162|Caenorhabditis elegans Hypothetical pr...   255   2e-68
Z75952-4|CAB00094.2|  303|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    29   2.8  
Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membr...    28   4.9  
U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein...    28   4.9  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    28   6.5  
U40419-8|AAA81428.3|  673|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    27   8.6  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   8.6  

>Z19154-5|CAA79557.1|  162|Caenorhabditis elegans Hypothetical
           protein C40H1.6 protein.
          Length = 162

 Score =  255 bits (625), Expect = 2e-68
 Identities = 105/144 (72%), Positives = 126/144 (87%)
 Frame = +1

Query: 124 CRLKQDPGHKELWVNRLKEEYQALIKYVQNNKSADNDWFRLESDKTGTRWFGKCWFVHNL 303
           C+ K  P   +LW+ RLKEEY+A+I  VQNNK  D DWF+LES++ GT+WFGKCW+ HN+
Sbjct: 15  CKTKASPRDGDLWIERLKEEYEAIIAAVQNNKDCDRDWFQLESNERGTKWFGKCWYFHNM 74

Query: 304 LKYEFDLEFDIPITYPKTAPEIALPGLDGKTAKMYRGGKICLTDHFKPLWARNVPRFGIA 483
           +KYEFD+EFDIPITYP TAPEIALP LDGKTAKMYRGGKICL++HFKPLWARN P+FGIA
Sbjct: 75  VKYEFDVEFDIPITYPVTAPEIALPELDGKTAKMYRGGKICLSEHFKPLWARNTPKFGIA 134

Query: 484 HAMALGLGPWLAVEIPEMIEKGVV 555
           HA ALGLGPW+AVEIP++IEKG++
Sbjct: 135 HAFALGLGPWMAVEIPDLIEKGLI 158



 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 81  VDEGTKRTLSSIPLLQTKAGPRAQGAMGEQIK 176
           +D+ TK +L +IPL +TKA PR      E++K
Sbjct: 1   MDDATKSSLKAIPLCKTKASPRDGDLWIERLK 32


>Z75952-4|CAB00094.2|  303|Caenorhabditis elegans Hypothetical
           protein F29D10.3 protein.
          Length = 303

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +1

Query: 157 LWVNRLKEEYQALIKYVQN--NKSADNDWFRLESDKTGTRWFGKCWFVHNLLKYEFDLE- 327
           L +NRL    Q+++ + +N  N +     F+L  + + + W  +  F++NL    F+ + 
Sbjct: 101 LTINRLDSSSQSILAFKRNETNDTCPAKSFQLTFESSSSEWIDEKGFIYNLTFTSFNNQW 160

Query: 328 -FDIPIT 345
            FD  +T
Sbjct: 161 IFDYTVT 167


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 547 LSRSSPVFPPPARDPAQEPWHGQSQTSARSSPTTA*NDQ*GISCHLGTSSL 395
           L+    V PP AR P+Q P + Q +   RS  + +  +Q  +  H   SSL
Sbjct: 574 LNLRDTVSPPVARAPSQPPSYSQPRPPPRSVSSVSSGNQHSVQVHDQFSSL 624


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 547 LSRSSPVFPPPARDPAQEPWHGQSQTSARSSPTTA*NDQ*GISCHLGTSSL 395
           L+    V PP AR P+Q P + Q +   RS  + +  +Q  +  H   SSL
Sbjct: 574 LNLRDTVSPPVARAPSQPPSYSQPRPPPRSVSSVSSGNQHSVQVHDQFSSL 624


>Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical
           protein W08D2.6 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 465 AEVWDCPCHGSWAGSLAGGGNTGDD 539
           AE   CP  GS  GS  GGG  G +
Sbjct: 320 AEYCHCPARGSHGGSSGGGGGGGGE 344


>U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membrane
           protein protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 567 LFVRDNAFLDHLRYFHRQPGTQPKSHGMGNPKPRHVPRPQRLEMISEAY 421
           LF +    L H R FH    T+  S G+      H+  P+++++++  Y
Sbjct: 367 LFKKHGENLQHNRDFHHGHSTKSTSPGLEEGHHEHLYTPEKMKLMAPDY 415


>U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein 3
           protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 567 LFVRDNAFLDHLRYFHRQPGTQPKSHGMGNPKPRHVPRPQRLEMISEAY 421
           LF +    L H R FH    T+  S G+      H+  P+++++++  Y
Sbjct: 367 LFKKHGENLQHNRDFHHGHSTKSTSPGLEEGHHEHLYTPEKMKLMAPDY 415


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 480 CPCHGSWAGSLAGGGNTGDDRERRCHVQRED 572
           C C   W GSL     T DD  ++C  Q  D
Sbjct: 78  CQCSEGWMGSLCDNLVTDDDTAQKCSPQCGD 108


>U40419-8|AAA81428.3|  673|Caenorhabditis elegans Hypothetical
           protein C27F2.1 protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 599 VQFVHFASSVFSLYVTTPFSIISGISTASQGPSPRAMAWAIPN-LGTFLAHN 447
           V  V F++   S+Y TT  S I  I TA        ++W++ N  G +  HN
Sbjct: 543 VLIVGFSNGSISVYRTTQASSIVNIPTADLSTRVTWISWSLTNPSGFYTIHN 594


>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -2

Query: 403 SSLSYRQD---RAGLFLVRSLDMLSVCQTQGQTHTSGGYEQTSICRTIWSRFCQ 251
           SSL  R D      L  VRS   +SV     Q+   G    + + RT+  RFC+
Sbjct: 427 SSLRSRSDVRKSTRLVGVRSSSSISVATNHAQSQDPGFQPHSGVTRTLKGRFCR 480


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
 Frame = -2

Query: 586  ISLPQSSLCT*QRLSRSSPVFPPPARDPAQEPWHGQSQTSARSSPTTA*NDQ*GISCHLG 407
            +S   SS    Q  S SSP  P  A+ PAQ      +  +  SS +   +     S   G
Sbjct: 904  VSTVASSTTIPQGSSSSSPQSPTSAQ-PAQSSSTSAATVTVSSSQSPTSSPAQQSSTPAG 962

Query: 406  TSSLSYRQD---RAGLFLVRSLDMLSVCQTQGQTHTSGGYEQTSIC 278
            +S+++ +Q    ++     +     +V  TQ  + TSGG   T IC
Sbjct: 963  SSTVTVQQSSSFQSPQSTTQIGSSTTVPSTQAPSSTSGGPTTTQIC 1008


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,302,401
Number of Sequences: 27780
Number of extensions: 349208
Number of successful extensions: 1221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)