Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_I03
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)               30   1.3  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 30   1.8  
SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)                  28   5.4  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    28   5.4  
SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         28   7.2  
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)                27   9.5  
SB_19798| Best HMM Match : Calx-beta (HMM E-Value=6.3e-12)             27   9.5  
SB_16713| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
 Frame = +2

Query: 83  LSPLXATVIAAPPTE----DYPKIVRSEFDA-SPDGAYNYNFETSNGIVRS----ETGEL 235
           L  L   V+ +PP E     +P+  +  +   SPDG  + NFE  NG + +        +
Sbjct: 173 LKDLEVPVLPSPPVEVPHGTFPRTFQEIWTTVSPDGICSVNFEFYNGAMSTAQCRRLSSV 232

Query: 236 KEALDDDNKPHVIVAVRGSYSY 301
            +A++ D++  V+V ++G Y++
Sbjct: 233 LQAVERDDRVKVVV-LKGGYNF 253


>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
          Length = 488

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 149 SEFDASPDGAYNYNFETSNGIVRSETGE 232
           +E DA PDG+YN++ ++   +V +ETGE
Sbjct: 218 TEEDAKPDGSYNFDHKS---VVNTETGE 242


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 238 GGSRRRQQASRYCCCAR 288
           GGSRRR   S++CC AR
Sbjct: 97  GGSRRRNSKSKFCCFAR 113


>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 116 PPTEDYPKIVRSEFDASPDGAY 181
           PPT+DY +  RS+ D S DG Y
Sbjct: 17  PPTKDYDRRSRSQDDDSDDGCY 38


>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
          Length = 599

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 164 SPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVR-GSYSYTNTDGKPETITYF 340
           SP G Y    E +  I R E  +L       +K H ++AVR G Y   + D    T+T+ 
Sbjct: 94  SPSGHYYKVCEPNFFIGRDENLDLTLKSRSVDKKHAVIAVRDGRYELYDMDSLNGTVTHS 153

Query: 341 A 343
           A
Sbjct: 154 A 154


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 204 TASYVAKLVS*RRXXXXXXXXXXXXXCEEATVTRTLTANPKPLRTSLTRLDT 359
           T SY    ++ R              C   T    +T N KP +TSLTRL++
Sbjct: 322 TGSYTFSPITRRDGGTYTCTVNNGNECPVDTKAMNITVNYKPEKTSLTRLES 373


>SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 154 IRRQPRWSLQLQFRDFQRHRT*RNW*AEGGSRRRQ 258
           +RR+  WS+Q++  +  RH   + W   GG ++R+
Sbjct: 3   VRRKDAWSMQVRQVEHPRHSYVQMWRKFGGPKKRE 37


>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 152 EFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 280
           E D+     YNY+    NG+  S+ G+L      DN  HV+ A
Sbjct: 65  EPDSEQADGYNYDTSHHNGVATSQRGQLARLAMGDNN-HVLNA 106


>SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
 Frame = +2

Query: 92  LXATVIAAPPTEDYPKIVRSEF---DASPDGAYNYNFETSNGIVRSETGELKEALDDDNK 262
           +   +++A    DY   V  E     ASP    N   ET   +   E    K  +D  N+
Sbjct: 476 MDTVLVSASSPLDYVAFVNREVLFPAASPINMVNITIETDGRVESHEVFRAKLTVDTANR 535

Query: 263 PHV 271
           PH+
Sbjct: 536 PHI 538


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 200 SNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADET 352
           S  + +  TG  K  LDD  KPHV+  ++ SY     D   E   +   ET
Sbjct: 204 SKTVTKMFTGFRKLTLDDLRKPHVVKDIQ-SYILNRLDDDSELRKHLTRET 253


>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 576 FVHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRH 460
           F  ++L   ++++ N+Q++  VS +L  S K M  +L H
Sbjct: 811 FQDELLMLDELIQGNIQRSQLVSEQLSDSRKTMVKVLEH 849


>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
          Length = 1303

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = -2

Query: 329  WFRVCRQCSCNCSFLXXXXXXXXXXXXXEPPSAHQFRYVRCRWKSRNCSCKLHRGWRRIQ 150
            WFR CR C   CS               +P + H  RY     K+      + R  RR+Q
Sbjct: 940  WFRFCRGCLIKCSDQEFGNSSSYIAIEWDPTTLH-LRYQSSLEKNCEEHESVERS-RRLQ 997

Query: 149  TE 144
            TE
Sbjct: 998  TE 999


>SB_19798| Best HMM Match : Calx-beta (HMM E-Value=6.3e-12)
          Length = 185

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 573 VHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRHTILY 448
           VH I   Q++++ N +KN    +     + + WW LR+ + Y
Sbjct: 139 VHTIF--QRLLRPNQRKNSPKKLFSACHSTKRWWRLRNVLAY 178


>SB_16713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 340 EVRNGFGFAVSVRVTVASSHSNNN 269
           E+  GF  A S  +T+ +SHSNNN
Sbjct: 146 EINGGFS-ATSTDLTIEASHSNNN 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,121,585
Number of Sequences: 59808
Number of extensions: 318643
Number of successful extensions: 794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)