Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_I02
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.21
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.86
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 28 2.0
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 6.1
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 6.1
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 6.1
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 26 8.1
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 26 8.1
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 26 8.1
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.1 bits (67), Expect = 0.21
Identities = 38/146 (26%), Positives = 69/146 (47%)
Frame = -2
Query: 758 VLSLLT*KSRSLVSRSSNLELHAPLK*MALTRTAAVAELSESGLTKSLMRLLVFSSTQSL 579
V S+L+ + S S S ++ + + T++ + +S S + S + ST SL
Sbjct: 576 VSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSL 635
Query: 578 IDLAATVFFEKSIFWTSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLA 399
+ ++++ S +S + T +++ TY+ I SS+ L+ S L+++
Sbjct: 636 MISSSSIISGSSSILSSSISTIPISSS--------LSTYSSSVIPSSSTLVSSSSSLIVS 687
Query: 398 NSVRIASSSGKPIAFKSSSWVSPSEA 321
+S +ASSS PI SSS VS A
Sbjct: 688 SS-PVASSSSSPIP-SSSSLVSTYSA 711
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.1 bits (62), Expect = 0.86
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -2
Query: 533 TSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 354
TS + TSL ++A ++ SS+ + S +L ++S SSS
Sbjct: 7 TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66
Query: 353 KSSSWVSPSEA 321
SSS+ SP+ +
Sbjct: 67 SSSSFTSPASS 77
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 397 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 492
FA + ++L KGV+L M + +HDG L +
Sbjct: 79 FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 724 SDRDFYVSKDKTIKVPMMYKRGDYKYGESAVL 819
+D +F+ + K+ K +K GD KYG++A+L
Sbjct: 666 NDPNFWAYERKSCK----FKNGDVKYGDTAIL 693
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 183 NLSNVLKNGNDNFTARMFTEVVKNNPGXKHCPLGI 287
N N+LK ND AR +TE V K P GI
Sbjct: 56 NSQNLLKQLNDEMKARKYTETVATFSSLK--PFGI 88
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 667 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 762
V+A+ F+ W + R T D DF K KTI
Sbjct: 68 VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 809 LSPYL*SPRLYIMGTLIVLSLLT*KSRSLVSRSS 708
L L SP LY+ ++ L T SRSLV+RS+
Sbjct: 73 LDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSA 106
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 110 DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 208
D K E +F YY R GS + CA W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 556 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 645
+T +A SIN W+ +NT I+ + N SLS
Sbjct: 9 STSSASSIN-WIPKNTKTSIESVSNTISLS 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,063
Number of Sequences: 5004
Number of extensions: 69917
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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