Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_I02
(873 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 126 3e-29
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 102 3e-22
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 96 3e-20
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2) 29 5.0
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 126 bits (303), Expect = 3e-29
Identities = 60/203 (29%), Positives = 115/203 (56%), Gaps = 1/203 (0%)
Frame = +1
Query: 268 SIVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELK 447
++ S S++ LA L + G T ++ K FP D + ++ + + G ++
Sbjct: 29 NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDGNQIL 88
Query: 448 MANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAK-SINDWVEENTNNRIKDL 624
MAN+++ G ++ E F S++ F++++ +D+ KN+ A+ ++N WVE+ T ++IK+L
Sbjct: 89 MANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNL 148
Query: 625 VNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYG 804
+ + T LVNA+YFKG+W F+ T F + + I+V MY+ +++Y
Sbjct: 149 IPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSSEFRYL 208
Query: 805 ESAVLNAQLIEIPYXGDQSSLIV 873
ES+ L Q++E+PY G++ S++V
Sbjct: 209 ESSTLGCQIVELPYAGEKLSMVV 231
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 102 bits (245), Expect = 3e-22
Identities = 58/197 (29%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Frame = +1
Query: 304 LAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD---LRSIKGV-ELKMANKVYVH 471
L + L S G T ++ G+ + + T K L S G E+++ NK++ H
Sbjct: 5 LGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGH 64
Query: 472 DGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNRIKDLVNPDSLSS 648
D ++ E F +R+ ++S++ +DF +K A K +N WV + T IK+L+ ++S
Sbjct: 65 DEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVINS 124
Query: 649 ATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV--SKDKTIKVPMMYKRGDYKYGESAVLN 822
T ++VNA+YFKG W +F E T F+V S + I+V MM ++ + A +
Sbjct: 125 LTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMKVNFYYDADIK 184
Query: 823 AQLIEIPYXGDQSSLIV 873
+++E+PY GD +++++
Sbjct: 185 CRVVELPYSGDDTAMVI 201
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 96.3 bits (229), Expect = 3e-20
Identities = 43/146 (29%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 439 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNRI 615
E+ +AN +++ + + F + + +++D+ +D+ + A K +N WVEE T +I
Sbjct: 49 EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108
Query: 616 KDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDY 795
DL+ P + T LVNAIYFKG W F + + +F + ++V MM+++ +
Sbjct: 109 CDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKF 168
Query: 796 KYGESAVLNAQLIEIPYXGDQSSLIV 873
KY S +L+E+PY Q S+++
Sbjct: 169 KYLHSDKYKCKLLELPYVDTQLSMVL 194
>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 331 HQKLKLTEREEAAPKMPRGQCFXPGLFFTTSVNILAVKLSF 209
HQ L + E + ++PK PR F GLF T +L V F
Sbjct: 50 HQNLSINEMDSSSPKRPRQHQF--GLFCTVFKPLLLVPSGF 88
>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
Length = 641
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +1
Query: 481 KLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDW---VEENTNNRIKD 621
K +E+ + S +F+ + +N+DFS + ++ DW VE N ++D
Sbjct: 460 KFEEDLRISS--MFSGEGENVDFSTDLYPTGNVEDWLLEVENTMRNSLRD 507
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 173 CHCRDGDSKQTNDCL 129
CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 28.7 bits (61), Expect = 6.6
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Frame = +1
Query: 310 QLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLD 489
Q+ +SD + L + F ++DA SK + ++++ K+Y +D
Sbjct: 703 QVTTSSDVNNALDELDEVQFSEEDARGIRGLSKDATFK----IKIEEKRKLYQISKAAVD 758
Query: 490 ENFAVVSRDVFNSDVQNIDFSKNTVA--AKSINDWVEENTNNRIKDLVNPDSLSSATAAV 663
+ D F ++ D S N+ + +++N+N+ + D +L A V
Sbjct: 759 GDTGSKMADRFLEQLER-DPSANSDGRGTDEPSGHLDKNSNSEVSDETLEKTLK---ANV 814
Query: 664 LVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIK 765
N KG++S D+ SD +S DK++K
Sbjct: 815 QDNIKVTKGSFSDSSDKSSGSDNTDKMSSDKSVK 848
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,537,606
Number of Sequences: 59808
Number of extensions: 514181
Number of successful extensions: 1459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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