Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H19
         (349 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590431-1|CAH71259.1| 1888|Homo sapiens nuclear pore membrane g...    28   7.0  
AL513546-1|CAH70552.1| 1888|Homo sapiens nuclear pore membrane g...    28   7.0  
AL358472-1|CAI14015.1| 1888|Homo sapiens nuclear pore membrane g...    28   7.0  
AK128000-1|BAC87225.1|  569|Homo sapiens protein ( Homo sapiens ...    28   7.0  

>AL590431-1|CAH71259.1| 1888|Homo sapiens nuclear pore membrane
           glycoprotein 210-like (LOC91181) protein.
          Length = 1888

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 172 CYNWHSQHNSIINIIRTYKN 113
           CY WHS H+  + +   Y+N
Sbjct: 65  CYTWHSTHHDAVTVEPLYEN 84


>AL513546-1|CAH70552.1| 1888|Homo sapiens nuclear pore membrane
           glycoprotein 210-like (LOC91181) protein.
          Length = 1888

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 172 CYNWHSQHNSIINIIRTYKN 113
           CY WHS H+  + +   Y+N
Sbjct: 65  CYTWHSTHHDAVTVEPLYEN 84


>AL358472-1|CAI14015.1| 1888|Homo sapiens nuclear pore membrane
           glycoprotein 210-like (LOC91181) protein.
          Length = 1888

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 172 CYNWHSQHNSIINIIRTYKN 113
           CY WHS H+  + +   Y+N
Sbjct: 65  CYTWHSTHHDAVTVEPLYEN 84


>AK128000-1|BAC87225.1|  569|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46118 fis, clone TESTI2037657, weakly  similar
           to Integral membrane glycoprotein gp210 precursor. ).
          Length = 569

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 172 CYNWHSQHNSIINIIRTYKN 113
           CY WHS H+  + +   Y+N
Sbjct: 65  CYTWHSTHHDAVTVEPLYEN 84


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,474,943
Number of Sequences: 237096
Number of extensions: 355665
Number of successful extensions: 306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)