Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H16
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 111 GCWPSISSGSTSQRIHRRRSAFYMYVHT 28
           G W +  + S   R+H+RR+A ++Y  T
Sbjct: 337 GIWHTRRTSSRGIRLHKRRNAMFVYAKT 364


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 277 PSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAIT 149
           P   V ++ Q   +P + +AP+TT + + + A      T   T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,025,982
Number of Sequences: 59808
Number of extensions: 199121
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)