Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H15
         (841 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FV6 Cluster: Putative uncharacterized protein; n=1; ...    38   0.31 

>UniRef50_Q05FV6 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 275

 Score = 37.9 bits (84), Expect = 0.31
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
 Frame = -1

Query: 490 NKPYYTHYMTLSLRLKTMKCCVYKKKNASRHLKN---IHAVLLKCAFYNYQKPLINFTQR 320
           N  Y        ++L  +KCC +KKK    ++ N   ++ + LK  + NY   +INF+  
Sbjct: 30  NFNYLKRLFFKKVKLINLKCCNFKKKKKINNIINYFFLNTLFLKVNYVNYIITIINFSN- 88

Query: 319 VF*M*TVNLLQENY*RQKIIQNSQETIYICIFKYI-LSGYNFLSTILMLF 173
              +     ++  + + KII  ++   YI   K I    Y+F+  I  LF
Sbjct: 89  ---LNIYFFIKNCFLKIKIISKNKINFYIFFSKIIFFFKYSFIKIICFLF 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,029,578
Number of Sequences: 1657284
Number of extensions: 11064315
Number of successful extensions: 20128
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 19642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20126
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)