Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H13
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31177| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_51816| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-24)                 29   3.0  
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)                   29   4.0  
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)               28   9.2  
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)                   28   9.2  
SB_3166| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.2  

>SB_31177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +2

Query: 155 KINKWDGAAAKNAVDDAIRE 214
           K++KWDG A KNA+DDA ++
Sbjct: 38  KVDKWDGNAVKNALDDAAKK 57


>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +2

Query: 554 TREASVTKSFANFIDVNGT--VVQNIVSNEITKLYHSLSS 667
           T  AS  K+  + +D++GT    Q ++ + +TK+YHSL++
Sbjct: 222 TNFASNAKAIRDEVDISGTDEQTQALLKSALTKMYHSLTN 261


>SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +2

Query: 554 TREASVTKSFANFIDVNGT--VVQNIVSNEITKLYHSLSS 667
           T  AS  K+  + +D++GT    Q ++ + +TK+YHSL++
Sbjct: 477 TNFASNAKAIRDEVDISGTDEQTQALLKSALTKMYHSLTN 516


>SB_51816| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-24)
          Length = 384

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 320 DYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVAKEK 454
           ++LYP  Q  L +II + + F+ + +L +   FK+  IF V ++K
Sbjct: 174 EFLYPTGQIELGVIILICTLFVAIPLLVILFCFKK--IFRVTRDK 216


>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
          Length = 487

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +2

Query: 473 VWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNI 625
           + +  + +++   +YN V+ + DTN N R  ++T    + +D+   VV  I
Sbjct: 68  IGKGGTNIRRLRTEYNAVVNVPDTNSNERVLTITAPRQSALDILAEVVPKI 118


>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +2

Query: 482 ASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEI 640
           AS+++  HD + +++      +G+TR+         F+D N +++Q +V  +I
Sbjct: 161 ASAHLDWHDKRCSMIF-----DGSTRQGEAIAVILRFLDENWSIIQRLVKIDI 208


>SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)
          Length = 454

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 550 AIRVSHNNYEIVFIIVFLHIRTGFPDPGVISNLLLGYHKDALLFECS 410
           +++ +++N +I+F+      +T   D G+I+N  + Y K  L F CS
Sbjct: 349 SLKNTYSNVKIIFLPKNTTSKTQPLDSGIIANWKIHYKKRMLRFICS 395


>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
          Length = 410

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 550 AIRVSHNNYEIVFIIVFLHIRTGFPDPGVISNLLLGYHKDALLFECS 410
           +++ +++N +I+F+      +T   D G+I+N  + Y K  L F CS
Sbjct: 124 SLKNTYSNIKIIFLPKNTASKTQPLDSGIIANWKIHYKKRMLRFICS 170


>SB_3166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 506 DDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEI 640
           DD    V    D  G+TR+  V      F+D N +++Q +V  +I
Sbjct: 204 DDVKVAVAQELDGPGSTRQGEVIAVILRFLDENWSIIQRLVKMDI 248


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 575 WSRMPRECCHSCLA*QLRDCIYHRVSSHKNW 483
           WS+  R CCH+C   +L    +    SH NW
Sbjct: 222 WSKHQRFCCHTCWLVKLMQSHF----SHPNW 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,093,940
Number of Sequences: 59808
Number of extensions: 460546
Number of successful extensions: 959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)