Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H11
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    30   0.53 
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    27   4.9  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    26   8.6  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   8.6  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -1

Query: 852 IYETFF----IS*IKWNFRYCFKQYCEFYQVFFKISSL 751
           +YET      I  +K + R+CFKQ  E+Y ++ K   L
Sbjct: 527 VYETALKLPVIKYVKGDNRFCFKQLLEYYDIYLKFKLL 564


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 854 KFMKHFLFRKLNGIFVTVSNNTANSTRFFL 765
           KF+K    +KLNGI  T+ N      R FL
Sbjct: 159 KFLKAHKGKKLNGIVETIRNGDQVRVRLFL 188


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 497 REGNRSSSVTVVLVAHSAGLDLRAVSDRGVGGELDN 390
           REG      T+VLV    G +L+A    G GG  ++
Sbjct: 311 REGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFES 346


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 790 VLFETVTKIPFNLRNKKCFINLSNIPNNLKS 882
           +L++  +KIP    N   F  LSN+ + LKS
Sbjct: 56  ILYKIYSKIPPEENNDALFSKLSNLVSRLKS 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,644,304
Number of Sequences: 5004
Number of extensions: 74880
Number of successful extensions: 212
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)