Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H11
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.96 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   5.1  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   8.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   8.9  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 8/27 (29%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 811 KIPFNLRN--KKCFINLSNIPNNLKSC 885
           ++P+ ++N   +C +N  N P+N+++C
Sbjct: 144 QVPYTVKNFHPRCAVNNYNDPSNVRNC 170


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
          releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 92 GECYTFCHVYFIIIFQRSCTGVLRAR-XRRY 3
          G  Y F  ++FII F  + +G ++    +RY
Sbjct: 5  GSLYCFARLFFIIGFFNAISGAIKGNDYQRY 35


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 846 ETFFIS*IKWNFRYCFKQYCEFYQVFFK 763
           + F +  +K +F   F+QYC  +++  K
Sbjct: 3   DNFTLQSLKKDFGTYFQQYCLHHKILIK 30


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 239 YALPAQHSACRSLEQRYGS 295
           Y L   H A + L QRYG+
Sbjct: 74  YKLNKIHDAYKDLNQRYGA 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,644
Number of Sequences: 438
Number of extensions: 5794
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)