Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H09
         (927 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          140   1e-33
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...   134   7e-32
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    31   0.98 
03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184     29   6.9  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  140 bits (340), Expect = 1e-33
 Identities = 74/150 (49%), Positives = 100/150 (66%)
 Frame = +1

Query: 328 SKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEA 507
           SKQSR EKK+RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEA
Sbjct: 75  SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134

Query: 508 KIEDLSTQATMAAAERFKAPETTATGNDASTTGTTVAPIAXXXXXXXXXXXXXXXXXXXI 687
           KIEDLS+Q    AA++F+  + +        +    A  A                   +
Sbjct: 135 KIEDLSSQLQAQAAQQFRMQDLSKV-----MSKPDAAAAAPADEEEEVDETGIEPRDIDL 189

Query: 688 VMSQANVSRAKAVRALKNNQSDIVNAIMEL 777
           VM+QA+VSRAKAV+ALK +  DIV+AIMEL
Sbjct: 190 VMTQASVSRAKAVKALKAHDGDIVSAIMEL 219


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score =  134 bits (325), Expect = 7e-32
 Identities = 84/177 (47%), Positives = 103/177 (58%), Gaps = 19/177 (10%)
 Frame = +1

Query: 304 AGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKN----------------- 432
           AG D   +SKQSR EKK+RK M KLG+K + GV RVTI+KSKN                 
Sbjct: 50  AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109

Query: 433 --ILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERFKAPETTATGNDASTTG 606
             ILFVI+ PDV+K+P+SDTY++FGEAKIEDLS+Q    AAE+FKAP       D S   
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAP-------DLSNVI 162

Query: 607 TTVAPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSRAKAVRALKNNQSDIVNAIMEL 777
           +   P A                   +VM+QA VSR++AV+ALK    DIV AIMEL
Sbjct: 163 SKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRSRAVKALKAANGDIVTAIMEL 219


>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 31.5 bits (68), Expect = 0.98
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 479 QTPTSFSVKPRLKICPHRPPWLQLRDSRHQKPQPLA 586
           Q P    ++ +L   P +PP LQ +   HQ+PQP A
Sbjct: 244 QQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQA 279


>03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184
          Length = 259

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = +1

Query: 277 DAGGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSP 456
           D G    P+   D+  +  Q RG+     I+  L LKP    E  +   S  +   + S 
Sbjct: 134 DLGEFVLPLFEEDVDIEDVQQRGQPDIPVIVQALTLKPFVQWEETSQSPSAEVNMAMTSL 193

Query: 457 DVYKN--PHSDTYIVFGEAKIEDLSTQATMAAAERFKAPE 570
           D ++N     D  I +   K+E    + TM   ++ +A E
Sbjct: 194 D-FENMLADRDRRIQYWRTKLEVAELKKTMVEVKKDQAVE 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,312,988
Number of Sequences: 37544
Number of extensions: 343842
Number of successful extensions: 1007
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)