Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H09
         (927 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.7  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    24   7.5  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   9.9  

>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 614 TVVPVVEASLPVAVVSGALNLSAAAMVACVDKSSILASPK 495
           T   VV A LPV VVS AL       +  +   S+ A P+
Sbjct: 52  TAAVVVNADLPVKVVSKALKGLMVVDIGDMRVVSVYAPPR 91


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +1

Query: 313  DIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPD-VYKNPHSDTY 489
            D V + + +R    A   M        Q ++ +  +  + I FV+  PD   +N  + T 
Sbjct: 1300 DKVCRGETNRRWSMALSSMGGHSQTSAQSLQSIAGQTERKISFVLQEPDNESENSSNTTL 1359

Query: 490  IVFGEAKIEDLSTQATMAAAERF 558
             + GE  ++ +   AT+   +R+
Sbjct: 1360 TIQGEENVQRM-WLATVVPCDRW 1381


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -1

Query: 411  HSLYSLYWFETEFTHYLSGLLLTTRLFRFADDVNSSNRVCDSTCIWCTCIFQFWN 247
            H+++    F++  T  L G++  T L        + + VC++T    + + Q W+
Sbjct: 1028 HAMFECPRFDSTRTELLHGVVPETLLEHMLQSPENWSNVCEATKRITSALQQDWD 1082


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 765,318
Number of Sequences: 2352
Number of extensions: 13068
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100882044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)