Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H09
         (927 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...   140   1e-33
AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...   138   5e-33
U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    33   0.38 

>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score =  140 bits (340), Expect = 1e-33
 Identities = 84/159 (52%), Positives = 97/159 (61%)
 Frame = +1

Query: 307 GIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDT 486
           G  I  ++KQSR EKKARK+ SKLGLK V GV RV IRKSKNILFVIN PDV+K+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 487 YIVFGEAKIEDLSTQATMAAAERFKAPETTATGNDASTTGTTVAPIAXXXXXXXXXXXXX 666
           YI+FGEAKIEDL+  A M+A E  K P   A          TV                 
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLK-PTREA------PQLKTVEEDENEDVEFKEDSTGI 158

Query: 667 XXXXXXIVMSQANVSRAKAVRALKNNQSDIVNAIMELXM 783
                 +V+SQAN +R KA+RALK   +DIVNAIM L M
Sbjct: 159 EEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLTM 197


>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score =  138 bits (334), Expect = 5e-33
 Identities = 83/163 (50%), Positives = 98/163 (60%), Gaps = 4/163 (2%)
 Frame = +1

Query: 307 GIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDT 486
           G  I  ++KQSR EKKARK+ SKLGLK V GV RV IRKSKNILFVIN PDV+K+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 487 YIVFGEAKIEDLSTQATMAAAERFK----APETTATGNDASTTGTTVAPIAXXXXXXXXX 654
           YI+FGEAKIEDL+  A M+A E  K    AP+      D +                   
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLKPTREAPQLKTVEEDEN-------------EDVEED 152

Query: 655 XXXXXXXXXXIVMSQANVSRAKAVRALKNNQSDIVNAIMELXM 783
                     +V+SQAN +R KA+RALK   +DIVNAIM L M
Sbjct: 153 STGIEEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLTM 195


>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +1

Query: 283 GGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDV 462
           GG   P     ++ K+  +  +KK +  + KL +  + G+E V + K    +   N+P V
Sbjct: 23  GGKGTPRRKKKVIHKTAAA-DDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKV 81

Query: 463 YKNPHSDTYIVFGEA 507
             +  ++T+ V G A
Sbjct: 82  QTSVPANTFSVTGSA 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,927,272
Number of Sequences: 27780
Number of extensions: 308632
Number of successful extensions: 957
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)