Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H08
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   221   4e-58
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       30   1.6  
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    29   4.8  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  221 bits (540), Expect = 4e-58
 Identities = 109/181 (60%), Positives = 136/181 (75%)
 Frame = +2

Query: 188 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 367
           TKIASEGLKGRVFEVSL DL    ++E  FRKF+LIAE VQG+NVL NFH M +T DKL 
Sbjct: 53  TKIASEGLKGRVFEVSLGDLN---NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLC 109

Query: 368 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 547
            +VKKW TLIEAN  VKTTDGY LRVF I FT K     +KT Y + +++R IR +M   
Sbjct: 110 SIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGC 169

Query: 548 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMEL 727
           I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+ ++ +L +L
Sbjct: 170 IEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDL 229

Query: 728 H 730
           H
Sbjct: 230 H 230



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 27/46 (58%), Positives = 37/46 (80%)
 Frame = +1

Query: 88  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGKSF 225
           VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQG +     ++G+ F
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVF 65


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 393  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 217
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 216  PFNPSEAI 193
              N SE++
Sbjct: 1182 VLNSSESL 1189


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 405 LASMRVCHFLTIHLSLSVVRSMPWKLQ-STLRPCTY-SAINLNLRKDLSASVSACRSARE 232
           +AS++    LT+ L L     +P  LQ   L+P T  S +  + ++  S S S+  S+  
Sbjct: 132 IASLQASSMLTVPL-LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSS 190

Query: 231 TSKTLPFNPSEA 196
           +S   PF PSE+
Sbjct: 191 SSAFHPFRPSES 202


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 393  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 217
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 216  PFNPSEAI 193
              N SE++
Sbjct: 1182 VLNSSESL 1189


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical protein
            F57C7.1b protein.
          Length = 1087

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 755  PPCLHRLRREVPSTSRSRNGASST 684
            PP  HR+R + PS S SR G  S+
Sbjct: 971  PPLQHRMRSDSPSPSASRTGNQSS 994


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
            F57C7.1a protein.
          Length = 1209

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 755  PPCLHRLRREVPSTSRSRNGASST 684
            PP  HR+R + PS S SR G  S+
Sbjct: 971  PPLQHRMRSDSPSPSASRTGNQSS 994


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 719 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 579
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 461 TNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE---VVNKLIPDSIAKDIE 628
           T + S+S     + QH Q RA++K M E +   V N ++ E   VV K + D    +I+
Sbjct: 198 TGRSSISAGFDVF-QHLQNRAVQKTMIEQLESAVRNQDVMEMGNVVKKGLEDGTLSEIQ 255


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +2

Query: 209 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 319
           L+G  + +S+ D +A TD E S +  R IAE+++ R+
Sbjct: 201 LRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,569,494
Number of Sequences: 27780
Number of extensions: 383512
Number of successful extensions: 1142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)