Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H06
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         29   6.2  
SB_34344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +3

Query: 288  LALGQAGGGVDKSKRITTRYMTK-YERARVLG-TRALQIAMC-APVMVELEGETDPLQIA 458
            LA+ +    VD+ K +   +    Y R ++    ++L+I M  +P+ V+ +  TD L   
Sbjct: 1034 LAILRLSDYVDRQKILDAIFTQNGYLREKLFNIAKSLRIRMLHSPISVQCD--TDRLSYV 1091

Query: 459  MKELKHGKIPIIIRRYLPDH 518
             + LK  K  I +R Y PDH
Sbjct: 1092 ARALKVKKSEITLRSYSPDH 1111


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 288  LALGQAGGGVDKSKRITTRYMTK-YERARVLG-TRALQIAMCAPVMVELEGETDPLQIAM 461
            LA+ +    VD+ K +   +    Y R ++    ++L+I M     + ++ +TD L    
Sbjct: 918  LAILRLSDYVDRQKILDAIFTQNGYLREKLFDIAKSLRIRMLHS-SISVQCDTDRLSYVA 976

Query: 462  KELKHGKIPIIIRRYLPDH 518
            + LK  K  I +R Y PDH
Sbjct: 977  RALKIKKSEITLRSYCPDH 995


>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 387  ALQIAMCAPVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHS 521
            A +  +C    V L G T P  + +  L++G  P+++R  LPD S
Sbjct: 1608 AREWTVCTIDKVSLPGIT-PSYLMVTRLRNGSAPVVLRLALPDDS 1651


>SB_34344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 408 APVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDE 545
           +PV   LE   +    AM E       ++ R    DH YEDW  +E
Sbjct: 581 SPVKSGLEESDEEFLDAMSEWPKEVASVLARLDSRDHDYEDWDEEE 626


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,652,630
Number of Sequences: 59808
Number of extensions: 309431
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)