Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H05
         (545 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n...    41   0.021
UniRef50_UPI00005A47B7 Cluster: PREDICTED: similar to NK2 transc...    34   1.9  
UniRef50_Q53RB7 Cluster: HEAT repeat, putative; n=5; Oryza sativ...    33   3.3  
UniRef50_UPI0000DD7ECC Cluster: PREDICTED: similar to Homeobox p...    33   4.3  
UniRef50_Q5BWW8 Cluster: SJCHGC04818 protein; n=1; Schistosoma j...    33   4.3  
UniRef50_A6NCS4 Cluster: Homeobox protein Nkx-2.6; n=14; Amniota...    33   4.3  
UniRef50_A3A1H2 Cluster: Putative uncharacterized protein; n=1; ...    33   5.7  
UniRef50_Q01T36 Cluster: 4-amino-4-deoxy-L-arabinose transferase...    32   9.9  

>UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n=1;
           Allochromatium vinosum|Rep: Sulfur globule protein CV1
           precursor - Chromatium vinosum (Allochromatium vinosum)
          Length = 127

 Score = 40.7 bits (91), Expect = 0.021
 Identities = 19/28 (67%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 16  APYGIAAPYGIAAPYTAYGA-YGVAPYG 96
           APYG  APYG  APY  YGA YG  PYG
Sbjct: 82  APYGYGAPYGYGAPY-GYGAPYGAMPYG 108



 Score = 37.9 bits (84), Expect = 0.15
 Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 16  APYGIAAPYGIAAPYTAYGA-YGV-APYG 96
           APYG  APYG  APY  YGA YG  APYG
Sbjct: 76  APYGYGAPYGYGAPY-GYGAPYGYGAPYG 103



 Score = 35.5 bits (78), Expect = 0.81
 Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 22  YGIAAPYGIAAPYTAYGA-YGV-APYGLG 102
           YG  APYG  APY  YGA YG  APYG G
Sbjct: 72  YGYGAPYGYGAPY-GYGAPYGYGAPYGYG 99


>UniRef50_UPI00005A47B7 Cluster: PREDICTED: similar to NK2
           transcription factor related, locus 6; n=1; Canis lupus
           familiaris|Rep: PREDICTED: similar to NK2 transcription
           factor related, locus 6 - Canis familiaris
          Length = 342

 Score = 34.3 bits (75), Expect = 1.9
 Identities = 18/33 (54%), Positives = 20/33 (60%)
 Frame = +1

Query: 4   PADTAPYGIAAPYGIAAPYTAYGAYGVAPYGLG 102
           PA   PYG  AP   AAPY+ YG Y  AP+G G
Sbjct: 269 PAFPGPYG--AP---AAPYSCYGGYAGAPFGAG 296


>UniRef50_Q53RB7 Cluster: HEAT repeat, putative; n=5; Oryza
            sativa|Rep: HEAT repeat, putative - Oryza sativa subsp.
            japonica (Rice)
          Length = 1086

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +1

Query: 187  SRYY*ITLHDRPCQLLNALVIDNVVPGVGRV-W*HRSTVGISR-IPGWRLVLPFLQKLFS 360
            SR Y +  H     L NA+  DN V  +G++   HR  +  S+ +P W   LP    L  
Sbjct: 905  SRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLPIKNDLIE 964

Query: 361  DLLLND 378
              ++++
Sbjct: 965  AKIVHE 970


>UniRef50_UPI0000DD7ECC Cluster: PREDICTED: similar to Homeobox
           protein Nkx-2.6 (Homeobox protein NK-2 homolog F); n=2;
           Theria|Rep: PREDICTED: similar to Homeobox protein
           Nkx-2.6 (Homeobox protein NK-2 homolog F) - Homo sapiens
          Length = 227

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   PADTAPYGIAAPYGIA-APYTAYGAYGVAPYGLG 102
           P   AP    +PY  A +PY+ YG Y  APYG G
Sbjct: 149 PGPGAP-AFPSPYSAAVSPYSCYGGYSGAPYGAG 181


>UniRef50_Q5BWW8 Cluster: SJCHGC04818 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC04818 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 290

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 67  YGAYGVAPYGLGVHAW*TDHDREPLFSNISYAKIACFFF 183
           + + G  PYG   H W   HD    F N+S+ K  C FF
Sbjct: 55  FASDGWCPYGYNCHFW---HDPSVKFPNVSFVKKPCQFF 90


>UniRef50_A6NCS4 Cluster: Homeobox protein Nkx-2.6; n=14;
           Amniota|Rep: Homeobox protein Nkx-2.6 - Homo sapiens
           (Human)
          Length = 301

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   PADTAPYGIAAPYGIA-APYTAYGAYGVAPYGLG 102
           P   AP    +PY  A +PY+ YG Y  APYG G
Sbjct: 223 PGPGAP-AFPSPYSAAVSPYSCYGGYSGAPYGAG 255


>UniRef50_A3A1H2 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 392

 Score = 32.7 bits (71), Expect = 5.7
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 138 RLAVVIGLPSVDAEAVGGDAV-SAISGVGRGDSVRCGDA 25
           RL V +G   VD  AVGGD +   + GV R +++  GDA
Sbjct: 138 RLNVAVGGGGVDGAAVGGDGIDGVVVGVDRLEALEVGDA 176


>UniRef50_Q01T36 Cluster: 4-amino-4-deoxy-L-arabinose transferase
           and related glycosyltransferases of PMT family-like
           protein precursor; n=1; Solibacter usitatus
           Ellin6076|Rep: 4-amino-4-deoxy-L-arabinose transferase
           and related glycosyltransferases of PMT family-like
           protein precursor - Solibacter usitatus (strain
           Ellin6076)
          Length = 882

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +1

Query: 19  PYGIAAPYGIAAPYTAYGAYGVAPYGLGVHAW*TDHDREPL 141
           P GI A +  AA YTA  A G+ PY LG+  W     R+P+
Sbjct: 253 PIGILAGFSFAAKYTA--AIGI-PYALGIVIWTRWRTRKPV 290


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,393,571
Number of Sequences: 1657284
Number of extensions: 8427361
Number of successful extensions: 24848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24796
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)