Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_H05
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 33 0.11
05_02_0018 + 5626122-5626200,5626683-5626709,5626972-5627042,562... 31 0.45
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 30 1.0
07_01_0180 + 1266975-1267550 29 3.2
10_08_0338 + 16916429-16916650,16916728-16917900 28 4.2
06_02_0055 + 10986228-10986388,10986717-10986899,10987013-10987652 28 4.2
01_05_0438 + 22142646-22143659,22144319-22144858 28 5.6
07_03_1406 + 26343915-26346032 27 9.8
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 27 9.8
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 27 9.8
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178... 27 9.8
>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 187 SRYY*ITLHDRPCQLLNALVIDNVVPGVGRV-W*HRSTVGISR-IPGWRLVLPFLQKLFS 360
SR Y + H L NA+ DN V +G++ HR + S+ +P W LP L
Sbjct: 905 SRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLPIKNDLIE 964
Query: 361 DLLLND 378
++++
Sbjct: 965 AKIVHE 970
>05_02_0018 +
5626122-5626200,5626683-5626709,5626972-5627042,
5627123-5627248,5627726-5627755
Length = 110
Score = 31.5 bits (68), Expect = 0.45
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3
Query: 120 GLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSIGRP 1
G S DAE+ GG A+ G GRG CG++ GG RP
Sbjct: 62 GGASHDAESEGGGMRWALVGEGRGSCAACGES-GGEGERP 100
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -3
Query: 132 AVVIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSI 10
A V+GL AV G V A+ GVG G S G A GG +
Sbjct: 43 AGVLGLIGETVGAVVGATVGAVDGVGAGASAGGGVAGGGGV 83
>07_01_0180 + 1266975-1267550
Length = 191
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 129 VVIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGG 16
V GL VDA A G D V++ + G V GD GG
Sbjct: 12 VGFGLFGVDAAAFGYDGVASDAAAGLSPVVGAGDGSGG 49
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/44 (45%), Positives = 21/44 (47%)
Frame = +1
Query: 7 ADTAPYGIAAPYGIAAPYTAYGAYGVAPYGLGVHAW*TDHDREP 138
A T YG YG A P TAYG YG +G GV A H P
Sbjct: 268 AGTVGYG----YGHANPGTAYGNYGAGGFG-GVPAGYGGHYGNP 306
>06_02_0055 + 10986228-10986388,10986717-10986899,10987013-10987652
Length = 327
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 90 GGDAVSAISGVGRGDSVRCGDAIGGSIG 7
GG + G G GD CGD GG +G
Sbjct: 287 GGSSGGEGGGGGSGDEEGCGDGSGGELG 314
>01_05_0438 + 22142646-22143659,22144319-22144858
Length = 517
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 90 GGDAVSAISGVGRGDSVRCGDAIG 19
GGD+V+ + GVG GD GD IG
Sbjct: 377 GGDSVTVVQGVGDGDG--GGDGIG 398
>07_03_1406 + 26343915-26346032
Length = 705
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 5 RPILPPMASPHLTESPRPTP 64
RP LPP+ASP T + P P
Sbjct: 19 RPRLPPLASPATTSTCAPAP 38
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 28 IAAPYGIAAPYT-AYGAYGVAPYGLGVHAW 114
+ +P GI Y A G +GV YG +H W
Sbjct: 33 VTSPEGIKGKYECAIGNFGVPQYGGTLHGW 62
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 305 IPTVDRCYQTRPTPGTT 255
+P DRC T P PGTT
Sbjct: 32 LPDCDRCSGTAPVPGTT 48
>01_06_1488 +
37716986-37717076,37717424-37717558,37717755-37717831,
37717934-37718181,37718503-37718559,37718665-37718800,
37718944-37719001,37719110-37719195,37719270-37719326,
37719537-37719557,37720553-37720954,37721500-37721647,
37721940-37722036,37724065-37724202,37724496-37724598,
37724792-37724828,37724905-37725014,37725141-37725164
Length = 674
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 201 NNVARSALSTIKCFSN*QRRAGRRSGLVTSVNGRYFPDPRLALSV 335
N + S +K F +RRAG S ++ G DPR L+V
Sbjct: 361 NTIEPSTQKALKKFGEKERRAGDESSRTLAMAGEAGGDPRAWLAV 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,368,573
Number of Sequences: 37544
Number of extensions: 232104
Number of successful extensions: 822
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -