Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H05
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)              31   0.61 
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)                       31   0.61 
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_57042| Best HMM Match : WD40 (HMM E-Value=4.9e-09)                  24   6.4  

>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
          Length = 421

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 16  APYGIAAPYGIAAPYTAYGAYGV-APYGL 99
           AP+G+  PYG + P +    YG   PYGL
Sbjct: 381 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 409


>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1387

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 16   APYGIAAPYGIAAPYTAYGAYGV-APYGL 99
            AP+G+  PYG + P +    YG   PYGL
Sbjct: 1224 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1252


>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1984

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 16   APYGIAAPYGIAAPYTAYGAYGV-APYGL 99
            AP+G+  PYG + P +    YG   PYGL
Sbjct: 1449 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1477


>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 13  TAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 99
           T PYGI  PY I  PY     Y +  PY +
Sbjct: 584 TCPYGITYPYDITCPYNITCPYDITWPYDI 613



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 13  TAPYGIAAPYGIAAPYTAYGAYGV-APYGL 99
           T PY I  PY I  PY     Y +  PYG+
Sbjct: 596 TCPYNITCPYDITWPYDITWPYDITCPYGI 625



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 13  TAPYGIAAPYGIAAPYTAYGAYGV-APYGL 99
           T PYGI   YGI  PY     +G+  PY +
Sbjct: 620 TCPYGITCLYGITCPYGITCQFGITCPYDI 649



 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +1

Query: 13  TAPYGIAAPYGIAAPYTAYGAYG-VAPYGL 99
           T PY I  PY I  PY     YG    YG+
Sbjct: 464 TCPYDITCPYDIKCPYDITCLYGFTCAYGI 493



 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 13  TAPYGIAAPYGIAAPYTAYGAYGV-APYGL 99
           T PYGI   +GI  PY     Y +  PY +
Sbjct: 632 TCPYGITCQFGITCPYDITCPYDITCPYDI 661



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +1

Query: 13  TAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 99
           T PY I  PY I  PY     Y +  PY +
Sbjct: 644 TCPYDITCPYDITCPYDITCPYDITYPYDI 673


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = +1

Query: 16   APYGIAAPYGIAAPYTAYGAYGV-APYGLG 102
            APY    PY I  PY     Y   APY  G
Sbjct: 1335 APYNTGEPYNIGVPYNTGAPYNTGAPYSTG 1364



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
 Frame = +1

Query: 19   PYGIAAPYGIAAPYTAYGAYGVA-PYGLG 102
            PY I  PY   APY     Y    PY  G
Sbjct: 1342 PYNIGVPYNTGAPYNTGAPYSTGEPYRTG 1370


>SB_57042| Best HMM Match : WD40 (HMM E-Value=4.9e-09)
          Length = 707

 Score = 23.8 bits (49), Expect(2) = 6.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 51  GDSVRCGDAIGGSIGRP 1
           GD V  GD++G ++G P
Sbjct: 257 GDEVCGGDSVGSAVGNP 273



 Score = 22.2 bits (45), Expect(2) = 6.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 135 LAVVIGLPSVDAEAVGGDAVSAISGVGRGD 46
           + V++    VD +  GGD      G G+GD
Sbjct: 214 ILVMVNDDDVDHDKDGGDDAGGGGGGGKGD 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,029,154
Number of Sequences: 59808
Number of extensions: 263212
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)