Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H05
         (545 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF448439-1|AAN76730.1|  704|Homo sapiens chloride channel form B...    31   3.5  
AF448438-1|AAN76729.1|  686|Homo sapiens chloride channel form A...    31   3.5  
DQ328868-1|ABC61098.1|  126|Homo sapiens immunoglobulin heavy ch...    30   6.1  
AJ239391-1|CAB37184.1|  119|Homo sapiens immunoglobulin heavy ch...    30   6.1  

>AF448439-1|AAN76730.1|  704|Homo sapiens chloride channel form B
           protein.
          Length = 704

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -3

Query: 111 SVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSI 10
           SVDAE   GD+V A   V  GDSV  GD  G  +
Sbjct: 229 SVDAEGPAGDSVDAEGRV--GDSVEAGDPAGDGV 260


>AF448438-1|AAN76729.1|  686|Homo sapiens chloride channel form A
           protein.
          Length = 686

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -3

Query: 111 SVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSI 10
           SVDAE   GD+V A   V  GDSV  GD  G  +
Sbjct: 229 SVDAEGPAGDSVDAEGRV--GDSVEAGDPAGDGV 260


>DQ328868-1|ABC61098.1|  126|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 126

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 7   ADTAPYGIAAPYGIAAPYTAYGAYGVAPYGLG 102
           ADTA Y  A  YG +A Y  Y  YG+  +G G
Sbjct: 88  ADTAVYYCARGYGDSATYKRYYYYGMDVWGQG 119


>AJ239391-1|CAB37184.1|  119|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 119

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 7   ADTAPYGIAAPYGIAAPYTAYGAYGVAPYGLG 102
           ADTA Y  A  YG +A Y  Y  YG+  +G G
Sbjct: 86  ADTAVYYCARGYGDSATYKRYYYYGMDVWGQG 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,774,894
Number of Sequences: 237096
Number of extensions: 1238437
Number of successful extensions: 2924
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2920
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)